Table 2.

Statistics of the reads alignments in the RNA-Seq study

Sample	Raw reads	Clean reads	Total mapped reads	Unique mapped reads	Multiple mapped reads	Mapping percentage (%)
SCK-1	41,554,238	39,494,120	35,701,154	34,246,056	1,455,098	85.91
SCK-2	43,797,840	42,091,578	38,448,660	37,198,941	1,249,719	87.79
SD-1	35,869,978	34,450,564	32,184,967	31,189,526	995,441	89.73
SD-2	46,885,350	45,052,578	42,435,372	41,163,197	1,272,175	90.51
TCK-1	42,080,970	40,148,064	36,969,596	35,403,809	1,565,787	87.85
TCK-2	42,751,392	40,515,224	37,020,007	35,729,643	1,290,364	86.59
TD-1	41,450,786	39,775,940	36,783,188	35,486,170	1,297,018	88.74
TD-2	42,570,770	40,610,952	37,462,435	36,287,895	1,174,540	88.00
Average	42,120,165.5	40,267,377.5	37,125,672.4	35,838,154.6	1,287,517.8	88.14