Table 5.
Rank of known epithelial and mesenchymal specific genes and DE genes found in Hallmark Epithelial to mesenchymal transition [73]
| Gene Symbol | Order in average rank | Gene Symbol | Order in average rank | Gene Symbol | Order in average rank |
|---|---|---|---|---|---|
| EMP3 | 3 | PCOLCE2 | 45 | VIM* | 144 |
| VCAN | 4 | FAP | 54 | FERMT2 | 147 |
| GEM | 6 | CDH11 | 73 | POSTN | 150 |
| CDH2* | 11 | TGFB1* | 81 | FBN2 | 155 |
| ZEB1* | 12 | SPARC | 84 | GJA1 | 159 |
| SPOCK1 | 13 | CYR61 | 90 | SERPINE1 | 161 |
| COL4A2 | 14 | WNT5A | 95 | DAB2 | 168 |
| FBN1 | 15 | CD59 | 98 | COL1A1 | 171 |
| PMP22 | 21 | GREM1 | 106 | MMP2 | 174 |
| COL5A1 | 22 | PLAUR | 108 | PCOLCE | 181 |
| CDH1* | 24 | CTGF | 118 | ENO2 | 187 |
| SLIT2 | 33 | COL1A2 | 120 | LGALS1 | 191 |
| EDIL3 | 36 | PLOD1 | 124 | SERPINE2 | 162 |
| DPYSL3 | 42 | MMP14 | 127 | ||
| COL6A3 | 43 | LOX | 129 |
*commonly used EMT marker genes