Table 3. TMRCA among P. vivax isolates estimated by t = D/2R.
| Genes | Length | n | Estimated mutation rates for 1.4 Myr | TMRCA (1.4 Myr) | Estimated mutation rates for 2.1 Myr | TMRCA (2.1 Myr) | Estimated mutation rates for 2.5 Myr | TMRCA (2.5 Myr) |
|---|---|---|---|---|---|---|---|---|
| DHFR | 709 | 11 | 1.23 × 10-7 | 17,114 | 8.21 × 10-8 | 25,639 | 6.90 × 10-8 | 30,507 |
| β-tubulin | 1185 | 8 | 4.78 × 10-8 | 46,653 | 3.18 × 10-8 | 70,126 | 2.67 × 10-8 | 83,521 |
| Pvs25 | 660 | 10 | 3.82 × 10-8 | 56,414 | 2.55 × 10-8 | 84,510 | 2.14 × 10-8 | 100,701 |
| CDC-2 | 775 | 7 | 5.70 × 10-8 | 74,123 | 3.80 × 10-8 | 111,184 | 3.19 × 10-8 | 132,445 |
| Weighted average | 45,680 | 68,512 | 81,607 |
Length, sequence length in base pairs; n, number of sequences. TMRCA estimates are based on the radiation of the major Macaca lineages as explained in the text. The estimated mutation rates are expressed in substitutions per site per year. Averages are weighted by the number of sequences employed for each locus.