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. 2017 May 23;18(6):1110. doi: 10.3390/ijms18061110
Factor Name Source Definition Threshold Maximal Value
fnls nlstart-factor BAM-file log2(log2(nlstart)+1)+1 3
fqsm qsm-factor BAM-file log2(log2(max(qsm13,2))) 15 2.916
fs5 score5-factor MaxEnt log2(max(score5,1)) 1 3.56
fs3 score3-factor MaxEnt log2(max(score3,1)) 1 4.01
sstr strand-sign MaxEnt 1
The BAM-file derived factor fnls is positive (>0). The BAM-file derived factor fqsm and the two MaxEnt score factors (fs5, fs3) are non-negative (≥ 0). Therefore wgis = 0 exactly when qsm15 or score51 or score31 (threshold). The sign of wgis is determined by the strand-sign sgn(wgis)=sgn(sstr). Maximal observed MaxEnt scores on annotated splice-sites are 11.8 for score5 and 16.1 for score3 leading to a theoretical maximum of 124.9 for wgis (on a 64 bit operating system).