|
Factor
|
Name
|
Source
|
Definition
|
Threshold
|
Maximal Value
|
|
|
nlstart-factor |
BAM-file |
|
|
3 |
|
|
qsm-factor |
BAM-file |
|
15 |
2.916 |
|
|
score5-factor |
MaxEnt |
|
1 |
3.56 |
|
|
score3-factor |
MaxEnt |
|
1 |
4.01 |
|
|
strand-sign |
MaxEnt |
|
|
1 |
| The BAM-file derived factor is positive (>0). The BAM-file derived factor and the two MaxEnt score factors (, ) are non-negative (≥ 0). Therefore wgis = 0 exactly when or or (threshold). The sign of wgis is determined by the strand-sign . Maximal observed MaxEnt scores on annotated splice-sites are 11.8 for score5 and 16.1 for score3 leading to a theoretical maximum of 124.9 for wgis (on a 64 bit operating system). |