| ACN | Acetonitrile |
| AEP | Asparaginyl endopeptidase |
| APC | Antigen-presenting cell |
| CD | Cluster of differentiation |
| CLIP | Class II-associated invariant chain peptide |
| DC | Dendritic cell |
| DTT | Dithiothreitol |
| FA | Formic acid |
| FCSi | Fetal calf serum (heat inactivated) |
| GM-CSF | Granulocyte macrophage—colony stimulating factor |
| HLA | Human leucocyte antigen |
| LPS | Lipopolysaccharide |
| MHC | Major histocompatibility complex |
| MS | Mass spectrometry |
| PAGE | Polyacrylamide gel electrophoresis |
| RFU | Relative fluorescent unit |
| SDS | Sodium dodecyl sulfate |
| TFA | Trifluoroacetic acid |