Table 1.

Summary of RNA-seq reads mapping to reference genome.

Samples	Clean Reads	Mapped Reads	Mapping Rate (%)	Uniq-Mapped Reads	Uniq-Mapping Rate (%)
E6FR_1	17482191	15924839	91	14374889	82
E6FR_2	17482191	15932034	91	14389796	82
E6FL_1	16816894	15089322	90	13945497	83
E6FL_2	17199818	15466729	90	14299262	83
E12FR_1	16848050	14545265	86	14104709	84
E12FR_2	17179086	14818688	86	14358014	84
E12FL_1	17059514	15157661	89	14570665	85
E12FL_2	16845550	14823214	88	14364057	85
D1FR_1	17983758	15664230	87	15239760	85
D1FR_2	16637905	14418212	87	14093197	85
D1FL_1	16795901	14538377	87	13981293	83
D1FL_2	16717969	14463322	87	14001712	84

Mapped reads: The total number of reads mapped to the reference genome. Mapping Rate: Mapped reads/clean reads. Uniq-mapped: The reads that matched the reference genome in only one position. Uniq-mapping Rate: Uniq-mapped reads/clean reads.