Skip to main content
. 2017 May 5;86:99–216. doi: 10.1016/j.simyco.2017.04.002

Table 1.

DNA barcodes of accepted Bipolaris spp.

Species Isolates1 GenBank accession numbers2
 References
ITS gapdh tef1
Bipolarisaustrostipae BRIP 12490T KX452442 KX452408 KX452459 Tan et al. (2016)
Bi. axonopicola BRIP 11740T KX452443 KX452409 KX452460 Tan et al. (2016)
Bi. bamagaensis BRIP 13577T KX452445 KX452411 KX452462 Tan et al. (2016)
Bi. bicolor CBS 690.96 KJ909762 KM042893 KM093776 Manamgoda et al. (2014)
Bi. chloridis BRIP 10965T KJ415523 KJ415423 KJ415472 Tan et al. (2014)
Bi. clavata BRIP 12530T KJ415524 KJ415422 KJ415471 Tan et al. (2014)
Bi. coffeana BRIP 14845IsoT KJ415525 KJ415421 KJ415470 Tan et al. (2014)
Bi. cookei AR 5185 KJ922391 KM034833 KM093777 Manamgoda et al. (2014)
Bi. crotonis BRIP 14838 KJ415526 KJ415420 KJ415479 Tan et al. (2014)
Bi. cynodontis CBS 109894 KJ909767 KM034838 KM093782 Manamgoda et al. (2014)
Bi. drechsleri CBS 136207T KF500530 KF500533 KM093760 Crous et al., 2013b, Manamgoda et al., 2014
Bi. gossypina BRIP 14840T KJ415528 KJ415418 KJ415467 Tan et al. (2014)
Bi. heliconiae BRIP 17186T KJ415530 KJ415417 KJ415465 Tan et al. (2014)
Bi. heveae CBS 241.92 KJ909763 KM034843 KM093791 Manamgoda et al. (2014)
Bi. luttrellii BRIP 14643IsoT AF071350 AF081402 – Berbee et al. (1999)
Bi. maydis CBS 137271NT AF071325 KM034846 KM093794 Berbee et al., 1999, Manamgoda et al., 2014
Bi. microlaenae CBS 280.91T JN601032 JN600974 JN601017 Manamgoda et al. (2011)
Bi. microstegii CBS 132550T JX089579 JX089575 KM093756 Crous et al., 2012a, Manamgoda et al., 2014
Bi. oryzae MFLUCC 10-0715NT JX256416 JX276430 JX266585 Manamgoda et al. (2012c)
Bi. panici-miliacei CBS 199.29LT KJ909773 KM042896 KM093788 Manamgoda et al. (2014)
Bi. peregianensis BRIP 12790T JN601034 JN600977 JN601022 Manamgoda et al. (2011)
Bi. pluriseptata BRIP 14839IsoT KJ415532 KJ415414 KJ415461 Tan et al. (2014)
Bi. sacchari ICMP 6227 KJ922386 KM034842 KM093785 Manamgoda et al. (2014)
Bi. salkadehensis Bi 1T AB675490 – – Ahmadpour et al. (2012b)
Bi. salviniae BRIP 16571LT KJ415535 KJ415411 KJ415457 Tan et al. (2014)
Bi. saccharicola CBS 155.26T KY905674 KY905686 KY905694 Present study
CBS 324.64 HE792932 KY905692 KY905699 Present study
da Cunha et al. (2012)
CBS 325.64 KY905675 KY905687 KY905695 Present study
Bi. secalis BRIP 14453IsoLT KJ415537 KJ415409 KJ415455 Tan et al. (2014)
Bi. setariae CBS 141.31 EF452444 EF513206 – Andrie et al. (2008)
Bi. shoemakeri BRIP 15929T KX452453 KX452419 KX452470 Tan et al. (2016)
Bi. simmondsii BRIP 12030T KX452454 KX452420 KX452471 Tan et al. (2016)
Bi. sivanesaniana BRIP 15847T KX452455 KX452421 KX452472 Tan et al. (2016)
Bi. sorokiniana CBS 110.14 KJ922381 KM034822 KM093763 Manamgoda et al. (2014)
Bi. subramanianii BRIP 16226T KX452457 KX452423 KX452474 Tan et al. (2016)
Bi. urochloae ATCC 58317 KJ922389 KM230396 KM093770 Manamgoda et al. (2014)
Bi. variabilis CBS 127716T KY905676 KY905688 KY905696 Present study
CBS 127736 KY905677 KY905689 – Present study
Bi. victoriae CBS 327.64T KJ909778 KM034811 KM093748 Manamgoda et al. (2014)
Bi. yamadae CBS 202.29ET KJ909779 KM034830 KM093773 Manamgoda et al. (2014)
CBS 127087 (neotype of Bi. euphorbiae) KY905673 KY905685 KY905693 Present study
Bi. woodii BRIP 12239T KX452458 KX452424 KX4524725 Tan et al. (2016)
Bi. zeae BRIP 11512IsoPT KJ415538 KJ415408 KJ415454 Tan et al. (2014)
Bi. zeicola FIP 532ET KM230398 KM034815 KM093752 Manamgoda et al. (2014)
1

AR, FIP: Isolates housed in Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, Maryland, USA; Bi: Isolates housed in the Department of Plant Protection, Faculty of Agricultural Sciences and Engineering, University College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran (TUPP); ATCC: American Type Culture Collection, Virginia, USA; BRIP: Queensland Plant Pathology Herbarium, Brisbane, Australia; CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; ICMP: International Collection of Micro-organisms from Plants, Landcare Research, Private Bag 92170, Auckland, New Zealand; MFLUCC: Mae Fah Luang University Culture Collection, Chiang Ria, Thailand. T, ET, IsoT, IsoLT, IsoPT, LT and NT indicate ex-type, ex-epitype, ex-isotype, ex-isolectotype, ex-isoparatype, ex-lectotype and ex-neotype strains, respectively.

2

ITS: internal transcribed spacers and intervening 5.8S nrDNA; gapdh: partial glyceraldehyde-3-phosphate dehydrogenase gene; tef1: partial translation elongation factor 1-alpha gene.