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. 2017 May 5;86:99–216. doi: 10.1016/j.simyco.2017.04.002

Table 12.

DNA barcodes of accepted Neofusicoccum spp.

Species Isolates1 GenBank accession numbers2
References
ITS rpb2 tef1 tub2
Neofusicoccum algeriense CBS 137504T KJ657702 KJ657715 Berraf-Tebbal et al. (2014)
Nm. andinum CBS 117453T AY693976 KX464002 AY693977 KX464923 Mohali et al., 2006, Yang et al., 2017
Nm. arbuti CBS 116131T AY819720 KX464003 KF531792 KF531793 Farr et al., 2005, Phillips et al., 2013, Yang et al., 2017
Nm. australe CMW 6837T AY339262 EU339573 AY339270 AY339254 Slippers et al. (2004b), Burgess & Sakalidis (unpubl. data)
Nm. batangarum CBS 124924T FJ900607 FJ900615 FJ900653 FJ900634 Begoude et al. (2010)
Nm. brasiliense CMM 1285PT JX513628 JX513608 KC794030 Marques et al. (2013)
Nm. buxi CBS 116.75T KX464165 KX464010 KX464678 Yang et al. (2017)
Nm. cordaticola CBS 123634T EU821898 EU821928 EU821868 EU821838 Pavlic et al. (2009a)
Nm. corticosae CBS 120081T DQ923533 KX464013 KX464682 KX464958 Summerell et al., 2006, Yang et al., 2017
Nm. cryptoaustrale CMW 23785T FJ752742 KX464014 FJ752713 FJ752756 Crous et al., 2013b, Yang et al., 2017
Nm. eucalypticola CBS 115679T AY615141 AY615133 AY615125 Slippers et al. (2004c)
Nm. eucalyptorum CBS 115791 AF283686 AY236891 AY236920 Smith et al., 2001, Slippers et al., 2004a
Nm. grevilleae CBS 129518 JF951137 Crous et al. (2011a)
Nm. hellenicum CERC1947T KP217053 KP217061 KP217069 Chen et al. (2015b)
Nm. italicum MFLUCC 15-0900T KY856755 KY856754 Present study
Nm. kwambonambiense CBS 123639T EU821900 EU821930 EU821870 EU821840 Pavlic et al. (2009a)
Nm. luteum CBS 562.92T KX464170 KX464020 KX464690 KX464968 Yang et al. (2017)
Nm. macroclavatum CBS 118223T DQ093196 KX464022 DQ093217 DQ093206 Burgess et al., 2005, Yang et al., 2017
Nm. mangiferae CBS 118532 AY615186 KX464023 DQ093220 AY615173 Slippers et al., 2005, Burgess et al., 2005, Yang et al., 2017
Nm. mediterraneum CBS 121718T EU040221 KX464024 Crous et al., 2007c, Yang et al., 2017
Nm. nonquaesitum CBS 126655T GU251163 KX464025 GU251295 GU251823 Inderbitzin et al., 2010, Yang et al., 2017
Nm. occulatum CBS 128008T EU301030 EU339558 EU339509 EU339472 Sakalidis et al. (2011)
Nm. parvum CBS 138823T AY236943 EU821963 AY236888 AY236917 Pavlic et al., 2009a, Slippers et al., 2004a,
Nm. pennatisporum MUCC 510T EF591925 EF591976 EF591959 Taylor et al. (2009)
Nm. pistaciae CBS 595.76IsoT KX464163 KX464008 KX464676 KX464953 Yang et al. (2017)
Nm. pistaciarum CBS 113083T KX464186 KX464027 KX464712 KX464998 Yang et al. (2017)
Nm. pistaciicola CBS 113089T KX464199 KX464033 KX464727 KX465014 Yang et al. (2017)
Nm. protearum CBS 114176T AF452539 KX464029 KX464720 KX465006 Denman et al., 2003, Yang et al., 2017
Nm. pruni CBS 121112T EF445349 KX464034 EF445391 KX465016 Damm et al., 2007, Yang et al., 2017
Nm. ribis CBS 115475 AY236935 EU339554 AY236877 AY236906 Slippers et al., 2004a, Sakalidis et al., 2011
Nm. stellenboschiana CBS 110864T AY343407 KX464042 AY343348 KX465047 Van Niekerk et al., 2004a, Yang et al., 2017
Nm. umdonicola CBS 123645T EU821904 EU821934 EU821874 EU821844 Pavlic et al. (2009a)
Nm. ursorum CMW 24480T FJ752746 KX464047 FJ752709 KX465056 Crous et al., 2013b, Yang et al., 2017
Nm. viticlavatum CBS 112878T AY343381 KX464048 AY343342 KX465058 Van Niekerk et al., 2004a, Yang et al., 2017
Nm. vitifusiforme CBS 110887T AY343383 KX464049 AY343343 KX465061 Van Niekerk et al., 2004a, Yang et al., 2017
1

CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CERC: China Eucalypt Research Centre (CERC), Chinese Academy of Forestry (CAF), China; CMM: Culture collection of Phytopathogenic Fungi “Prof. Maria Menezes”, Universidade Federal Rural de Pernambuco, Recife, Brazil; CMW: Tree Pathology Co-operative Program, Forestry and Agricultural Biotechnology Institute, University of Pretoria, South Africa; MFLUCC: Mae Fah Luang University Culture Collection, Chiang Ria, Thailand; MUCC: Murdoch University, Perth, Western Australia. T, IsoT and PT indicate ex-type, ex-isotype and ex-paratype strains, respectively.

2

ITS: internal transcribed spacers and intervening 5.8S nrDNA; rpb2: partial RNA polymerase II second largest subunit gene; tef1: partial translation elongation factor 1-alpha gene; tub2: partial β-tubulin gene.