Table 18.
DNA barcodes of accepted Puccinia spp.
| Species | Isolates1 | GenBank accession numbers2 |
References | |
|---|---|---|---|---|
| ITS | LSU | |||
| Pucciniaabrupta var. partheniicola | BRIP 59295 | – | KX999864 | Present study |
| Pu. acroptili | BPI 863523 | JN204187 | JN204187 | Bruckart et al. (2012) |
| Pu. arthrocnemi | BRIP 57772 | – | KX999865 | Present study |
| Pu. aucta | BRIP 60028 | – | KX999866 | Present study |
| Pu. bassiae | BRIP 57788 | – | KX999867 | Present study |
| Pu. brachypodii | BRIP 59466 | – | KX999868 | Present study |
| Pu. caricina | BRIP 57951 | – | KX999870 | Present study |
| Pu. carissae | BRIP 53242 | – | KX999871 | Present study |
| Pu. chrysanthemi | NA | EU816926 | EU816926 | Pedley (2009) |
| Pu. convolvuli | BPI 871465 | – | DQ354512 | Aime (2006) |
| Pu. coronata var. avenae f. sp. avenae | PUR 22125LT | HM131256 | – | Liu & Hambleton (2013) |
| Pu. coronata var. avenae f. sp. graminicola | PRM 155608 | HM131309 | – | Liu & Hambleton (2013) |
| Pu. coronati-agrostis | PUR N114T | HM131319 | – | Liu & Hambleton (2013) |
| Pu. coronati-brevispora | PUR N652T | HM131235 | – | Liu & Hambleton (2013) |
| Pu. coronati-calamagrostidis | PUR 22155LT | HM131304 | – | Liu & Hambleton (2013) |
| Pu. coronati-hordei | PUR 89857T | HM131225 | – | Liu & Hambleton (2013) |
| Pu. coronati-japonica | PUR F16131T | HM131317 | – | Liu & Hambleton (2013) |
| Pu. coronati-longispora | PRC 196T | HM131232 | – | Liu & Hambleton (2013) |
| Pu. cygnorum | NA | EF490601 | – | Langrell et al. (2008) |
| Pu. cynodontis | BRIP 57556 | – | KX999873 | Present study |
| Pu. dianellae | BRIP 57433 | – | KM249859# | McTaggart et al. (2016a) |
| Pu. dichondrae | BRIP 60027 | – | KX999874 | Present study |
| Pu. dioicae | BPI 879279 | – | GU058019# | Dixon et al. (2010) |
| Pu. duthiei | BRIP 61025 | – | KX999875 | Present study |
| Pu. flavenscentis | BRIP 57992 | – | KX999876 | Present study |
| Pu. gastrolobii | BRIP 57735 | – | KX999877 | Present study |
| Pu. geitonoplesii | BRIP 55679 | KM249860 | KM249860 | McTaggart et al. (2016a) |
| Pu. gilgiana | BRIP 57723 | KF690673 | KF690690 | McTaggart et al. (2014) |
| Pu. graminis f. sp. tritici | CDL 75-36-700-3 | NW_003526581.1* | Duplessis et al. (2011) | |
| Pu. grevilleae | BRIP 55600 | – | KX999878 | Present study |
| Pu. haemodori | BRIP 57777 | KF690676 | KF690694 | McTaggart et al. (2014) |
| Pu. hemerocallidis | BRIP 53476 | KM249855 | KM249855 | McTaggart et al. (2016a) |
| Pu. horiana | NA | HQ201326 | HQ201326 | Alaei et al. (2009) |
| Pu. hypochoeridis | BRIP 57771 | – | KX999879 | Present study |
| Pu. kuehnii | BPI 879137 | GQ283007 | – | Flores et al. (2009) |
| Pu. lagenophorae | BRIP 57563 | KF690677 | KF690696 | McTaggart et al. (2014) |
| Pu. levis var. tricholaenae | BRIP 56867 | – | KX999880 | Present study |
| Pu. liberta | BRIP 59686 | – | KX999881 | Present study |
| Pu. loranthicola | BRIP 59685 | – | KX999882 | Present study |
| Pu. ludwigii | BRIP 60129 | – | KX999883 | Present study |
| Pu. magnusiana | BPI 879281 | – | GU058000# | Dixon et al. (2010) |
| Pu. malvacearum | PBM 2572 | – | EF561641# | Matheny & Hibbett (unpubl. data) |
| Pu. melanocephala | BPI 878929 | – | GU058001# | Dixon et al. (2010) |
| Pu. menthae | BPI 871110 | – | DQ354513# | Aime (2006) |
| Pu. mixta | BRIP 61576 | KU296893 | KU296893 | McTaggart et al. (2016a) |
| Pu. muehlenbeckiae | BRIP 57718 | – | KX999884 | Present study |
| Pu. myrsiphylli | BRIP 57782 | – | KM249854# | McTaggart et al. (2016a) |
| Pu. nakanishikii | BPI 879283 | – | GU058002# | Dixon et al. (2010) |
| Pu. merrilliana | BRIP 56913 | – | KX999885 | Present study |
| Pu. paullula | BRIP 60018 | – | KX999886 | Present study |
| Pu. pelargonii-zonalis | BRIP 57414 | – | KX999887 | Present study |
| Pu. polysora | HSZ1879 | HQ189433 | HQ189433 | Crouch & Szabo (2011) |
| Pu. porri | BRIP 61579 | KU296902 | KU296902 | McTaggart et al. (2016a) |
| Pu. pritzeliana | BRIP 57798 | – | KX999888 | Present study |
| Pu. purpurea | BRIP 57994 | – | KX999889 | Present study |
| Pu. rhagodiae | BRIP 60078 | – | KX999890 | Present study |
| Pu. rhaphidophorae | BRIP 56840 | – | KX999891 | Present study |
| Pu. scirpi | BRIP 61027 | – | KX999892# | Present study |
| Pu. scleriae | BRIP 56911 | – | KX999893 | Present study |
| Pu. smilacis | BPI 871784 | DQ354533 | DQ354533 | Aime (2006) |
| Pu. sparganioidis | BPI 879285A | – | GU058027# | Dixon et al. (2010) |
| Pu. striiformis | HSZ1834 | GQ457306 | GQ457306 | Jin et al. (2010) |
| Pu. stylidii | BRIP 60107 | KJ622216 | KJ622215 | McTaggart et al. (2014) |
| Pu. tetragoniae | BRIP 59703 | – | KX999894 | Present study |
| Pu. triticina | NA | ADAS02000001.1* | Kiran et al. (2016) | |
| Pu. unica | BRIP 56930 | – | KX999895 | Present study |
| Pu. ursiniae | BRIP 57993 | KF690684 | KF690705 | McTaggart et al. (2014) |
| Pu. xanthii | BRIP 56946 | – | KX999896 | Present study |
1
CDL: US Department of Agriculture, Agricultural Research Service, Cereal Disease Laboratory; BPI: US National Fungus Collections, Beltsville, Maryland, USA; BRIP: Queensland Plant Pathology Herbarium, Brisbane, Australia; HSZ: Cereal Disease Laboratory collection, St. Paul, Minnesota, USA; PBM: P. Brandon Matheny (personal collection); PRC: Charles University in Prague, Prague, Czech Republic; PRM: National Museum, Prague, Czech Republic; PUR: Purdue University, west Lafayette, Indiana, USA. T and LT indicate ex-type and ex-lectotype, respectively.
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; LSU: partial 28S large subunit RNA gene. *Whole genome sequence. #ITS2–LSU sequence.