Table 3.

Prediction accuracies for leaf rust (LR), stem rust (SR), and stripe rust (YR) resistance in the 45th and 46th international bread wheat screening nurseries (IBWSN)

Trait	Dataset	IBWSN	LS	GBLUP	GBLUP A	RKHS-M	RKHS-P	RKHS-MP
Leaf rust	Seedling 2010	45th	0.31 ± 0.09	0.7 ± 0.03	0.69 ± 0.03	0.71 ± 0.03	0.7 ± 0.03	0.74 ± 0.03
	Seedling 2012	45th	0.42 ± 0.1	0.58 ± 0.05	0.6 ± 0.05	0.59 ± 0.05	0.73 ± 0.05	0.72 ± 0.05
	Seedling 2012	46th	0.66 ± 0.04	0.64 ± 0.05	0.7 ± 0.03	0.65 ± 0.05	0.61 ± 0.07	0.67 ± 0.05
	El Batan 2010	45th	0.34 ± 0.05	0.43 ± 0.05	0.43 ± 0.04	0.43 ± 0.05	0.42 ± 0.07	0.46 ± 0.05
	El Batan 2012	45th	0.12 ± 0.07	0.41 ± 0.05	0.26 ± 0.07	0.41 ± 0.05	0.34 ± 0.06	0.41 ± 0.05
	El Batan 2013	45th	0.29 ± 0.06	0.47 ± 0.06	0.44 ± 0.06	0.48 ± 0.06	0.5 ± 0.06	0.52 ± 0.06
	El Batan 2011	46th	0.28 ± 0.05	0.51 ± 0.04	0.49 ± 0.05	0.51 ± 0.04	0.5 ± 0.03	0.53 ± 0.04
	El Batan 2013	46th	0.38 ± 0.03	0.52 ± 0.04	0.51 ± 0.03	0.53 ± 0.03	0.48 ± 0.03	0.56 ± 0.03
Stem rust	Njoro 2010 main	45th	0.41 ± 0.05	0.59 ± 0.04	0.64 ± 0.03	0.59 ± 0.04	0.63 ± 0.03	0.65 ± 0.03
	Njoro 2011 main	45th	0.41 ± 0.08	0.59 ± 0.05	0.62 ± 0.04	0.59 ± 0.05	0.53 ± 0.07	0.58 ± 0.06
	Njoro 2011 main	46th	0.31 ± 0.04	0.54 ± 0.05	0.54 ± 0.05	0.54 ± 0.05	0.55 ± 0.06	0.62 ± 0.05
	Njoro 2011 off	46th	0.31 ± 0.03	0.47 ± 0.06	0.43 ± 0.05	0.47 ± 0.06	0.34 ± 0.04	0.45 ± 0.06
Stripe rust	Seedling 2013	46th	0.77 ± 0.03	0.73 ± 0.03	0.78 ± 0.02	0.73 ± 0.03	0.7 ± 0.03	0.74 ± 0.03
	Quito 2011	45th	0.37 ± 0.05	0.39 ± 0.06	0.41 ± 0.06	0.38 ± 0.07	0.34 ± 0.08	0.39 ± 0.07
	Toluca 2012	45th	0.45 ± 0.04	0.39 ± 0.04	0.45 ± 0.04	0.39 ± 0.05	0.37 ± 0.04	0.39 ± 0.04
	Toluca 2013	45th	0.55 ± 0.03	0.69 ± 0.02	0.7 ± 0.02	0.68 ± 0.02	0.66 ± 0.03	0.7 ± 0.03
	Quito 2012	46th	0.51 ± 0.03	0.55 ± 0.03	0.6 ± 0.03	0.54 ± 0.03	0.58 ± 0.03	0.61 ± 0.03
	Njoro 2011	46th	0.51 ± 0.03	0.52 ± 0.03	0.56 ± 0.03	0.52 ± 0.04	0.55 ± 0.04	0.56 ± 0.04
	Toluca 2011	46th	0.63 ± 0.03	0.6 ± 0.03	0.65 ± 0.03	0.59 ± 0.02	0.64 ± 0.02	0.63 ± 0.02
	Toluca 2013	46th	0.63 ± 0.04	0.68 ± 0.03	0.71 ± 0.04	0.68 ± 0.03	0.55 ± 0.06	0.66 ± 0.04

IBWSN International bread wheat screening nursery, LS least squares, GBLUP genomic best linear unbiased prediction, GBLUP A genomic-BLUP with selected loci as fixed effects, RKHS-M reproducing kernel Hilbert spaces-markers, RKHS-P reproducing kernel Hilbert spaces pedigree, RKHS-MP reproducing kernel Hilbert spaces-markers and pedigree