Table 1. Proteomic sequencing data used to compare identity between viruses and within viruses.
Species | Collection date | WHO Region | No. of samples |
---|---|---|---|
ZIKV | 1947–2015 | African, Americas, Western Pacific | 34 |
DENV1 | 01/01/2010– 06/01/2016 | African, Americas, European, South-East Asia, Western Pacific | 171 |
DENV2 | 01/01/2010– 06/01/2016 | Americas, Eastern Mediterranean, South-East Asia, Western Pacific | 158 |
DENV3 | 01/01/2010– 06/01/2016 | Americas, Eastern Mediterranean, South-East Asia, Western Pacific | 62 |
DENV4 | 01/01/2010– 06/01/2016 | Americas, South-East Asia, Western Pacific | 58 |
WNV | 01/01/2008–06/01/2016 | Americas, European, South-East Asia, | 44 |
JEV | 1951–2012 | South-East Asia, Western Pacific | 19 |
YFV | 1981–2016 | African, Americas, Western Pacific | 31 |
CHIKV | 1953-2015 | African, Americas, European, South-East Asia, Western Pacific | 212 |
CHIKV: chikungunya virus; DENV1−4: dengue virus serotype 1; JEV: Japanese encephalitis virus; WHO: World Health Organization; WNV: West Nile virus; YFV; yellow fever virus; ZIKV: Zika virus.
Note: For ZIKV, we used data set A from Faria et al.17 We downloaded the protein sequences of JEV, YFV and CHIKV from the National Center of Biotechnology Information (NCBI) protein database and sequences for DENV serotypes 1–4 and WNV from NCBI virus variation resource.18