Table 1.
Characterization of the Allelic Loci and Their DNA Sequences from the Two Maize Inbred Lines B73 and Mo17
| Maximum Extent of the Shared Sequence (bp)
|
Annotated Genes
|
Repetitive Elements
|
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BAC Clones and GenBank Accession Numbers
|
Total Analyzed Sequence (bp)
|
Gene Density (kb/Gene)
|
Full-Length LTR-Retroelements
|
Non-LTR-Retroelements
|
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| Locus | Inbred Line | Total | Nonallelic | Allelic | Total | Allelic | Transposons | |||||
| Locus9002 | B73 | c0189B10 | 317,137 | 295,420 | 21 | 15 | 14 | 12 | – | 3 | ||
| chromosome 1L:bin 1.08 | c178B16 | |||||||||||
| Mo17 | b68b.c4 | 6 | 4 | |||||||||
| b106a.c21 | 366,120 | 338,565 | 6 | – | 56 | 19 | 1 | 3 | ||||
| b101a.c15 | ||||||||||||
| Locus9008 | B73 | c0064G09 | 339,089 | 330,373 | 9 | 2 | 37 | 21 | – | 1 | ||
| chromosome 2S:bin 2.04 | c0088M03 | |||||||||||
| Mo17 | b130b.k18 | 7 | 9 | |||||||||
| b129a.g23 | 282,600 | 255,143 | 7 | – | 36 | 15 | – | 1 | ||||
| b45a.g17 | ||||||||||||
| Locus9009 | B73 | c0187E18 | 323,584 | 323,584 | 17 | – | 19 | 15 | 2 | 3 | ||
| chromosome 7L:bin 7.04 | b0305F08 | |||||||||||
| Mo17 | b4c.h1 | 17 | 8 | |||||||||
| b53c.h1 | 405,672 | 308,206 | 23 | 6 | 13 | 11 | 1 | 3 | ||||
| be82d.f24 | ||||||||||||
| adh1 locus | B73 | AF123535 | 160,480 | 141,724 | 6 | – | 24 | 8 | 2 | – | ||
| chromosome 1L: bin 1.10 | 6 | 5 | ||||||||||
| Mo17 | b161.k19 | 126,039 | 118,523 | 6 | – | 20 | 6 | 2 | – | |||
| Total loci 9002, 9008, 9009, and adh1 | 2,320,721 | 2,111,538 | 95 | 23 | 36 | 22 | 107 | 26 | 8 | 14 | ||
| bz1 locus | McC | AF391808 | 226,001 | 114,076 | 13 | 4 | 9 | 4 | – | – | 1 | |
| chromosome 9S: bin 9.02 | B73 | AF448416 | 106,186 | 78,165 | 9 | – | 9 | 9 | 3 | – | – | |
| Mo17 | b103.c20 | 203,581 | 55,876 | 9 | – | 6 | 2 | 1 | – | – | ||
| Total all loci | 2,856,489 | 2,359,655 | 126 | 27 | 45 | 19 | 116 | 27 | 8 | 15 | ||
The total analyzed sequence segments per locus and the maximum extent of the shared sequence between the inbreds Mo17 and B73 are summarized in columns 4 and 5, respectively. The number of identified genes and their presence in the two inbreds, as well as the gene density, are summarized in columns 6 through 9. The numbers of repetitive elements are indicated in columns 10 through 13.