Table III.
Potential gene-loss events in Arabidopsis and rice
| Loss in | Family ID | Speciesa | Family Sizeb | Function | Probec | Evolutionary Conservationd |
|---|---|---|---|---|---|---|
| Arabidopsis | 152 | 6 | 11 | Unknown | 29729_1996.1 | Gossypium arboreum, grasses |
| Arabidopsis | 7748 | 8 | 13 | Unknown | 3635_1091.1 | Gossypium hirsutum, Glycine max, Solanum tuberosum |
| Arabidopsis | 10777 | 11 | 13 | Unknown | 29729_1339.1 | G. arboreum, G. max, Medicago truncatula |
| Arabidopsis | 11343 | 7 | 8 | Unknown | 29729_2160.1 | G. arboreum, G. max, M. truncatula |
| Rice | 2118 | 6 | 7 | Unknown | 4513_12561.1 | Hordeum vulgare, Lycopersicon esculentum |
| Rice | 2431 | 8 | 18 | Unknown | 4513_2513.1 | Triticum aestivum, H. vulgare |
| Rice | 3448 | 5 | 5 | Oxidoreductase, 2OG-Fe(II) oxygenase family | 4577_13672.1 | Zea mays, Arabidopsis, Beta vulgaris |
| Rice | 3563 | 6 | 6 | Unknown | 132711_1331.1 | H. vulgare, Sorghum propinquum |
| Rice | 3705 | 7 | 8 | Unknown | 4565_16492.1 | T. aestivum, Z. mays |
| Rice | 5304 | 6 | 6 | Unknown | 4577_22894.1 | Z. mays, L. esculentum, G. max |
| Rice | 5357 | 6 | 7 | Ubiquitin family protein | 4513_2676.1 | H. vulgare, Arabidopsis, M. truncatula |
| Rice | 6190 | 7 | 8 | Unknown | 4577_1043.1 | Z. mays, Arabidopsis, G. max |
| Rice | 6248 | 7 | 7 | Unknown | 4513_12850.1 | T. aestivum, H. vulgare, Z. mays |
| Rice | 6840 | 5 | 6 | Brix domain-containing protein | 4513_1319.1 | T. aestivum, H. vulgare, Z. mays |
| Rice | 8373 | 11 | 14 | Quinolinate phosphoribosyltransferase | 4558_2586.1 | T. aestivum, Z. mays, Sorghum bicolor |
| Rice | 9577 | 5 | 5 | MA3 domain-containing protein | 4513_5042.1 | T. aestivum, Z. mays, H. vulgare |
| Rice | 9601 | 8 | 13 | Unknown | 4577_2849.1 | Z. mays, Arabidopsis, G. max |
| Rice | 10255 | 5 | 6 | Temperature sensing protein related | 4558_5791.1 | T. aestivum, S. bicolor, Arabidopsis |
| Rice | 10829 | 11 | 12 | Unknown | 4513_7620.1 | T. aestivum, H. vulgare, Z. mays |
| Rice | 10975 | 5 | 5 | Unknown | 4513_5641.1 | T. aestivum, H. vulgare, Z. mays |
| Rice | 13242 | 11 | 12 | Unknown | 4513_2178.1 | T. aestivum, H. vulgare, Z. mays |
a
The number of species in which the gene family was found.
b
The total number of proteins assigned to this gene family.
c
The protein ID of the probe that was used to search against the raw genomic BAC sequences (see text for details).
d
A subset of taxa where the gene family was found.