Table 1.
The annotated mitochondrial genome of the four cestodes
| Gene | Position | Size | Intergenic nucleotides | Codon | Anti-codon | Gene | Position | Size | Intergenic nucleotides | Codon | Anti-codon | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| From | To | Start | Stop | From | To | Start | Stop | ||||||||
| (A) Atractolytocestus huronensis | (B) Breviscolex orientalis | ||||||||||||||
| cox3 | 1 | 643 | 643 | ATG | T | 1 | 643 | 643 | ATG | T | |||||
| tRNA-His(H) | 644 | 705 | 62 | GTG | 644 | 707 | 64 | GTG | |||||||
| cytb | 707 | 1792 | 1086 | 1 | ATG | TAA | 708 | 1793 | 1086 | ATG | TAA | ||||
| nad4L | 1792 | 2052 | 261 | -1 | ATG | TAG | 1793 | 2053 | 261 | -1 | ATG | TAA | |||
| nad4 | 2013 | 3245 | 1233 | -40 | ATG | TAG | 2014 | 3246 | 1233 | -40 | ATG | TAG | |||
| tRNA-Gln(Q) | 3247 | 3307 | 61 | 1 | TTG | 3247 | 3313 | 67 | TTG | ||||||
| tRNA-Phe(F) | 3304 | 3367 | 64 | -4 | GAA | 3306 | 3369 | 64 | -8 | GAA | |||||
| tRNA-Met(M) | 3364 | 3425 | 62 | -4 | CAT | 3364 | 3424 | 61 | -6 | CAT | |||||
| atp6 | 3427 | 3942 | 516 | 1 | ATG | TAA | 3427 | 3942 | 516 | 2 | ATG | TAG | |||
| nad2 | 3943 | 4818 | 876 | GTG | TAG | 3942 | 4814 | 873 | -1 | GTG | TAG | ||||
| tRNA-Val (V) | 4819 | 4879 | 61 | TAC | 4817 | 4876 | 60 | 2 | TAC | ||||||
| tRNA-Ala (A) | 4878 | 4938 | 61 | -2 | TGC | 4875 | 4936 | 62 | -2 | TGC | |||||
| tRNA-Asp(D) | 4942 | 5002 | 61 | 3 | GTC | 4940 | 5002 | 63 | 3 | GTC | |||||
| nad1 | 5003 | 5896 | 894 | ATG | TAG | 5005 | 5898 | 894 | 2 | ATG | TAG | ||||
| tRNA-Asn(N) | 5896 | 5959 | 64 | -1 | GTT | 5898 | 5960 | 63 | -1 | GTT | |||||
| tRNA-Pro(P) | 5962 | 6021 | 60 | 2 | TGG | 5963 | 6024 | 62 | 2 | TGG | |||||
| tRNA-Ile(I) | 6021 | 6084 | 64 | -1 | GAT | 6024 | 6087 | 64 | -1 | GAT | |||||
| tRNA-Lys(K) | 6085 | 6143 | 59 | CTT | 6088 | 6147 | 60 | CTT | |||||||
| nad3 | 6144 | 6491 | 348 | GTG | TAG | 6148 | 6498 | 351 | GTG | TAG | |||||
| tRNA-Ser(S1) | 6489 | 6545 | 57 | -3 | GCT | 6497 | 6552 | 56 | -2 | GCT | |||||
| tRNA-Trp(W) | 6547 | 6608 | 62 | 1 | TCA | 6555 | 6618 | 64 | 2 | TCA | |||||
| cox1 | 6613 | 8166 | 1554 | 4 | ATG | TAG | 6625 | 8166 | 1542 | 6 | ATG | TAG | |||
| tRNA-Thr(T) | 8157 | 8217 | 61 | -10 | TGT | 8157 | 8219 | 63 | -10 | TGT | |||||
| 16S | 8218 | 9171 | 954 | 8220 | 9166 | 947 | |||||||||
| tRNA-Cys(C) | 9172 | 9230 | 59 | GCA | 9167 | 9230 | 64 | GCA | |||||||
| 12S | 9231 | 9931 | 701 | 9231 | 9937 | 707 | |||||||||
| tRNA-Leu(L1) | 9932 | 9995 | 64 | TAG | 9938 | 10,002 | 65 | TAG | |||||||
| tRNA-Ser(S2) | 9998 | 10,059 | 62 | 2 | TGA | 10,009 | 10,072 | 64 | 6 | TGA | |||||
| tRNA-Leu(L2) | 10,060 | 10,123 | 64 | TAA | 10,075 | 10,136 | 62 | 2 | TAA | ||||||
| NCR1 | 10,124 | 10,996 | 873 | 10,137 | 10,344 | 208 | |||||||||
| cox2 | 10,997 | 11,569 | 573 | GTG | TAA | 10,345 | 10,920 | 576 | ATG | TAG | |||||
| tRNA-Glu(E) | 11,570 | 11,640 | 71 | TTC | 10,921 | 10,987 | 67 | TTC | |||||||
| nad6 | 11,641 | 12,099 | 459 | GTG | TAG | 10,988 | 11,446 | 459 | GTG | TAG | |||||
| tRNA-Tyr(Y) | 12,106 | 12,171 | 66 | 6 | GTA | 11,454 | 11,517 | 64 | 7 | GTA | |||||
| tRNA-Arg(R) | 12,173 | 12,226 | 54 | 1 | TCG | 11,519 | 11,574 | 56 | 1 | TCG | |||||
| nad5 | 12,227 | 13,783 | 1557 | GTG | TAG | 11,577 | 13,124 | 1548 | 2 | GTG | TAA | ||||
| tRNA-Gly(G) | 13,784 | 13,847 | 64 | TCC | 13,124 | 13,186 | 63 | -1 | TCC | ||||||
| NCR2 | 13,848 | 15,130 | 1283 | 13,187 | 14,011 | 825 | |||||||||
| (C) Khawia sinensis | (D) Schyzocotyle acheilognathi (CN) | ||||||||||||||
| cox3 | 1 | 637 | 637 | ATG | T | 1 | 655 | 655 | ATG | T | |||||
| tRNA-His(H) | 638 | 699 | 62 | GTG | 656 | 730 | 75 | GTG | |||||||
| cytb | 701 | 1822 | 1122 | 1 | ATG | TAA | 734 | 1831 | 1098 | 3 | ATG | TAG | |||
| nad4L | 1804 | 2064 | 261 | -19 | ATG | TAG | 1833 | 2093 | 261 | 1 | GTG | TAG | |||
| nad4 | 2025 | 3257 | 1233 | -40 | ATG | TAA | 2054 | 3304 | 1251 | -40 | GTG | TAG | |||
| tRNA-Gln(Q) | 3258 | 3318 | 61 | TTG | 3304 | 3367 | 64 | -1 | TTG | ||||||
| tRNA-Phe(F) | 3315 | 3378 | 64 | -4 | GAA | 3363 | 3426 | 64 | -5 | GAA | |||||
| tRNA-Met(M) | 3374 | 3436 | 63 | -5 | CAT | 3423 | 3486 | 64 | -4 | CAT | |||||
| atp6 | 3440 | 3955 | 516 | 3 | ATG | TAA | 3490 | 4005 | 516 | 3 | ATG | TAG | |||
| nad2 | 3960 | 4832 | 873 | 4 | ATG | TAG | 4006 | 4878 | 873 | ATG | TAG | ||||
| tRNA-Val (V) | 4835 | 4894 | 60 | 2 | TAC | 4883 | 4948 | 66 | 4 | TAC | |||||
| tRNA-Ala (A) | 4893 | 4954 | 62 | -2 | TGC | 4958 | 5019 | 62 | 9 | TGC | |||||
| tRNA-Asp(D) | 4960 | 5024 | 65 | 5 | GTC | 5025 | 5087 | 63 | 5 | GTC | |||||
| nad1 | 5025 | 5918 | 894 | ATG | TAG | 5092 | 5985 | 894 | 4 | ATG | TAA | ||||
| tRNA-Asn(N) | 5918 | 5984 | 67 | -1 | GTT | 5991 | 6055 | 65 | 5 | GTT | |||||
| tRNA-Pro(P) | 5988 | 6047 | 60 | 3 | TGG | 6060 | 6122 | 63 | 4 | TGG | |||||
| tRNA-Ile(I) | 6047 | 6110 | 64 | -1 | GAT | 6128 | 6193 | 66 | 5 | GAT | |||||
| tRNA-Lys(K) | 6117 | 6177 | 61 | 6 | CTT | 6198 | 6259 | 62 | 4 | CTT | |||||
| nad3 | 6178 | 6523 | 346 | ATG | T | 6264 | 6608 | 345 | 4 | ATG | TAA | ||||
| tRNA-Ser(S1) | 6524 | 6578 | 55 | TCT | 6607 | 6665 | 59 | -2 | GCT | ||||||
| tRNA-Trp(W) | 6579 | 6641 | 63 | TCA | 6666 | 6729 | 64 | TCA | |||||||
| cox1 | 6646 | 8196 | 1551 | 4 | ATG | TAG | 6742 | 8328 | 1587 | 12 | ATG | TAG | |||
| tRNA-Thr(T) | 8187 | 8247 | 61 | -10 | TGT | 8342 | 8404 | 63 | 13 | TGT | |||||
| NCR1 | 8405 | 8528 | 124 | ||||||||||||
| 16S | 8248 | 9193 | 946 | 8529 | 9494 | 966 | |||||||||
| tRNA-Cys(C) | 9194 | 9251 | 58 | GCA | 9495 | 9555 | 61 | GCA | |||||||
| 12S | 9252 | 9960 | 709 | 9556 | 10,285 | 730 | |||||||||
| tRNA-Leu(L1) | 9961 | 10,023 | 63 | TAG | cox2 | 10,286 | 10,858 | 573 | ATG | TAA | |||||
| tRNA-Ser(S2) | 10,025 | 10,087 | 63 | 1 | TGA | E | 10,862 | 10,924 | 63 | 3 | TTC | ||||
| tRNA-Leu(L2) | 10,089 | 10,150 | 62 | 1 | TAA | nad6 | 10,928 | 11,383 | 456 | 3 | ATG | TAA | |||
| NCR1 | 10,151 | 10,699 | 549 | L1 | 11,402 | 11,465 | 64 | 18 | TAG | ||||||
| cox2 | 10,700 | 11,273 | 574 | ATG | T | L2 | 11,468 | 11,531 | 64 | 2 | TAA | ||||
| tRNA-Glu(E) | 11,272 | 11,332 | 61 | -2 | TTC | Y | 11,539 | 11,602 | 64 | 7 | GTA | ||||
| nad6 | 11,333 | 11,791 | 459 | ATG | TAA | S2 | 11,620 | 11,685 | 66 | 17 | TGA | ||||
| tRNA-Tyr(Y) | 11,797 | 11,859 | 63 | 5 | GTA | NCR2 | 11,686 | 11,851 | 166 | ||||||
| tRNA-Arg(R) | 11,872 | 11,925 | 54 | 12 | TCG | 11,852 | 11,909 | 58 | TCG | ||||||
| nad5 | 11,926 | 13,476 | 1551 | ATG | TAA | 11,913 | 13,478 | 1566 | 3 | ATG | TAA | ||||
| tRNA-Gly(G) | 13,476 | 13,537 | 62 | -1 | TCC | 13,484 | 13,547 | 64 | 5 | TCC | |||||
| NCR2 | 13,538 | 14,620 | 1083 | NCR3 | 13,548 | 14,046 | 499 | ||||||||