Table 1. Summary of the sequence reads and P transcriptome.
| Summary of sequence reads | ||
|---|---|---|
| Sample | F | L5 |
| Raw reads | 55,725,337 | 50,234,050 |
| Clean reads | 51,957,988 | 49,275,894 |
| Clean reads (%) | 93.24 | 98.09 |
| Clean bases (Gb) | 6.5 | 6.16 |
| Q20 of clean reads (%) | 96.09 | 96.89 |
| Total clean bases (Gb) | 12.66 | |
| Characteristics of the P transcriptome | ||
| Levels | Transcripts | Unigenes |
| Total nucleotides | 99,597,159 | 51,401,554 |
| Numbers (length > 200 bp) (n) | 115,369 | 82,769 |
| Average length (bp) | 863 | 621 |
| N50 | 1,731 | 949 |
| Shortest transcript (bp) | 201 | |
| Longest transcript (bp) | 20,809 | |