Table III.

Occurrence frequencies (%) of the candidate motifs between 20-bp genomic sequences centered at insertion sites and the same length genomic sequences retrieved randomly from Arabidopsis genome

A single digital motif code represents a full motif while a double digital motif code represents a partial motif. If the first motif code number of a partial motif is the same as a motif code number of a full motif, the motif is a partial motif of the full motif. The symbols * and ** indicate P values less than 0.05 and 0.01, respectively. [AT] and [TA] represent A or T, [TC] and [CT] represent C or T, [GAT] represents G, A, or T, and so on. These representations are also applied in Tables IV and V.

Motif Code	Consensus Sequence	dSpm	Ds	GABI-Kat T-DNA	FLAGdb T-DNA	Control
1	CCTCCTC | GGAGGAG	0.43*	0.53*	0.20	0.17	0.30
11	CC[TA]CC[AT]C | G[TA]GG[AT]GG	1.23*	1.27*	0.57	0.57	0.77
2	GGTGGTG | CCACCAC	0.67**	0.47**	0.23	0.13	0.20
21	G[GAT]TGGTG | C[CTA]ACCAC	1.30**	1.47**	0.67	0.67	0.57
22	C[AT][TC]CA[CT]C | G[GA]TG[AG][TA]G	2.70*	3.87**	1.93	1.73	2.10
3	TCTTCT | AGAAGA	2.83	3.47*	2.70	2.67	2.93
31	[GA]GA[AG]GA | [CT]CT[TC]CT	6.47*	7.40**	5.57	5.73	5.63
32	[GA]AGAAG[AG] | [CT]TCTTC[TC]	2.73	3.23*	2.60	2.63	2.80
33	TC[TC]TCT[TC]C | AG[AG]AGA[AG]G	1.13*	1.13*	0.77	0.77	0.83