Table 3. Computer time in s for 1,000 alignments on an Intel 2.4-GHz Pentium 4.
| Alignment length
|
|||
|---|---|---|---|
| Program | 100 | 200 | 300 |
| qrna | 485 | 4,044 | 14,777 |
| ddbrna | 741 | 921 | 1,522 |
| rnaz | 163 | 375 | 754 |
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