Table 1.
Analysis of 89 isolates from Panax notoginseng with the related species and their isolation information
| Phylogenetic group (genus) |
Representative isolate (accession No.) |
Closest species in GenBank (accession No.) |
Similarity (%) | Tissues of P. notoginseng |
No. of isolates | |||
|---|---|---|---|---|---|---|---|---|
| Roots | Stems | Leaves | Seeds | |||||
| ASCOMYCETES | ||||||||
| Capnodiales | ||||||||
| Cladosporium | PH30450 (KP714353) | Cladosporium cladosporioides (KJ767066 ) | 100 | 3 | 8 | |||
| PH30409 (KP714354) | Cladosporium oxysporum (KJ475816) | 100 | 3 | |||||
| PH30412 (KP714355) | Cladosporium oxysporum (KJ475816) | 100 | 2 | |||||
| Chaetothyriales | ||||||||
| Phialophora | PH30403 (KP714356) | Phialophora mustea (KF850364) | 100 | 1 | 1 | |||
| Diaporthales | ||||||||
| Phomopsis | PH30406 (KP714357) | Phomopsis columnaris (KC145883) | 100 | 2 | 2 | |||
| Eurotiales | ||||||||
| Aspergillus | PH30427 (KP714358) | Aspergillus versicolor (KJ152174) | 100 | 1 | 3 | 4 | ||
| Penicillium | PH30444 (KP714359) | Penicillium chrysogenum (LN482541) | 100 | 2 | 10 | |||
| PH30424 (KP714360) | Penicillium crustosum (LN482509) | 100 | 3 | |||||
| PH30378 (KP714361) | Penicillium cordubense (KJ191427) | 100 | 3 | |||||
| PH30390 (KP714362) | Penicillium lapidosum (KJ676451) | 100 | 2 | |||||
| Glomerellales | ||||||||
| Colletotrichum | PH30420 (KP714363) | Colletotrichum gloeosporioides (KF864554) | 100 | 2 | 2 | |||
| Helotiales | ||||||||
| Botryotinia | PH30439 (KP714364) | Botryotinia fuckeliana (KF802809) | 100 | 2 | 2 | |||
| Hypocreales | ||||||||
| Acremonium | PH30454 (KP714365) | Acremonium implicatum (HQ914932) | 98 | 1 | 1 | |||
| Fusarium | PH30410 (KP714366) | Fusarium acuminatum (KF887097) | 100 | 1 | 8 | |||
| PH30386 (KP714367) | Fusarium oxysporum (KJ026700) | 100 | 3 | |||||
| PH30436 (KP714368) | Fusarium solani (KF939488) | 100 | 2 | 2 | ||||
| Ilyonectria | PH30396 (KP714369) | Ilyonectria macrodidyma (HQ703420) | 100 | 2 | 3 | |||
| PH30398 (KP714370) | Ilyonectria macrodidyma (HQ703420) | 100 | 1 | |||||
| Myrothecium | PH30382 (KP714371) | Myrothecium sp. (HQ631058) | 99 | 2 | 1 | 3 | ||
| Plectosphaerella | PH30464 (KP714372) | Plectosphaerella sp. (JX535104) | 100 | 1 | 1 | 2 | 5 | |
| PH30457 (KP714373) | Plectosphaerella sp. (JX535104) | 99 | 1 | |||||
| Trichoderma | PH30435 (KP714374) | Trichoderma longibrachiatum (KJ767089) | 100 | 1 | 6 | |||
| PH30441 (KP714375) | Trichoderma koningiopsis (KM079603) | 100 | 2 | 1 | 1 | |||
| PH30432 (KP714376) | Trichoderma spirale (KM079610) | 100 | 1 | |||||
| Microascales | ||||||||
| Periconia | PH30428 (KP714377) | Periconia byssoides (KC954160) | 99 | 1 | 1 | |||
| Pleosporales | ||||||||
| Alternaria | PH30445 (KP714378) | Alternaria sp. (KC771455) | 100 | 1 | 15 | |||
| PH30438 (KP714379) | Alternaria alternata (KM015489) | 100 | 2 | 5 | ||||
| PH30452 (KP714380) | Alternaria tenuissima (KF308886) | 100 | 2 | 2 | ||||
| PH30425 (KP714381) | Alternaria tenuissima (KF308886) | 100 | 1 | 1 | ||||
| PH30442 (KP714382) | Alternaria alternata (KM015489) | 100 | 1 | |||||
| Dictyosporium | PH30404 (KP714383) | Dictyosporium digitatum (DQ018089) | 98 | 1 | 1 | |||
| Phoma | PH30459 (KP714384) | Phoma draconis (GU237795) | 100 | 1 | 3 | |||
| PH30391 (KP714385) | Phoma radicina (JQ676200) | 99 | 2 | |||||
| Sordariales | ||||||||
| Chaetomium | PH30461 (KP714386) | Chaetomium globosum (KJ728838) | 100 | 1 | 1 | |||
| Humicola | PH30417 (KP714387) | Humicola fuscoatra (JN031580) | 99 | 1 | 1 | |||
| Thielavia | PH30430 (KP714388) | Thielavia arenaria (JX535015) | 99 | 1 | 1 | |||
| Incertae sedis | ||||||||
| Arthrinium | PH30448 (KP714390) | Arthrinium arundinis (KF850624) | 99 | 2 | 2 | |||
| Xylariales | ||||||||
| Pestalotiopsis | PH30451 (KP714391) | Pestalotiopsis vismiae (JX305715) | 100 | 2 | 4 | |||
| PH30414 (KP714392) | Pestalotiopsis uvicola (JN198506 ) | 100 | 2 | |||||
| Incertae sedis | PH30402 (KP714389) | Sordariomycetes sp. (JX244023) | 99 | 2 | 2 | |||
| ZYGOMYCETES | ||||||||
| Mucorales | ||||||||
| Mucor | PH30392 (KP714393) | Mucor hiemalis (JF299220) | 100 | 3 | 3 | |||
| No. of total isolates | 42 | 16 | 12 | 19 | 89 | |||