Table 1.
Proteins Newly Assigned to the Ragweed Plant and Their Properties^
| PROTEIN NAME | DBSP | Num | Mr | EUP | PID% | TS | COV% | C | G | W | PUTATIVE FUNCTION |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 14-3-3 protein 6 | S. lycopersicum | P93211 | 28938 | 2 | 100 | 24 | 41 | 1 | 1 | 1 | Metabolic Regulation |
| 17.3 kDa class I heat shock protein | G. max | P02519 | 17347 | 5 | 100 | 5 | 31 | 1 | Protein Folding | ||
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 | A. thaliana | O04499 | 60580 | 4 | 100 | 9 | 12 | 1 | 1 | 1 | Glucose Metabolism |
| 26S protease regulatory subunit S10B homolog B | A. thaliana | Q9MAK9 | 44758 | 4 | 100 | 5 | 16 | 1 | 1 | Protein Catabolism | |
| 40S ribosomal protein S13 | G. max | P62302 | 17141 | 4 | 100 | 7 | 30 | 1 | 1 | Translation | |
| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | C. roseus | Q42699 | 84860 | 2 | 100 | 14 | 14 | 1 | 1 | Amino Acid Metabolism | |
| 6-phosphogluconate dehydrogenase, decarboxylating 1 | S. oleracea | Q94KU1 | 53247 | 3 | 100 | 9 | 16 | 1 | 1 | 1 | Gluconate Metabolism |
| 60S ribosomal protein L11 | O. sativa. ind | A2YDY2 | 20836 | 5 | 100 | 6 | 28 | 1 | 1 | 1 | Translation |
| ADP,ATP carrier protein 1, mitochondrial | G. hirsutum | O22342 | 42095 | 2 | 99 | 8 | 11 | 1 | 1 | 1 | Membrane Transport |
| ADP-ribosylation factor 1 | S. bakko | O48649 | 20609 | 8 | 100 | 14 | 58 | 1 | 1 | 1 | Protein Transport |
| ATP synthase subunit alpha, mitochondrial | H. annuus | P18260 | 55488 | 5 | 100 | 33 | 52 | 1 | 1 | 1 | ATP Synthesis |
| ATPase 8, plasma membrane-type | A. thaliana | Q9M2A0 | 104136 | 5 | 100 | 35 | 18 | 1 | 1 | 1 | ATP Synthesis |
| Aconitate hydratase 1 | A. thaliana | Q42560 | 98153 | 4 | 100 | 18 | 20 | 1 | 1 | 1 | Citrate Metabolism |
| Adenosylhomocysteinase | T. aestivum | P32112 | 53438 | 2 | 100 | 10 | 18 | 1 | 1 | One Carbon Metabolism | |
| Adenylate kinase A | O. sativa.jap | Q08479 | 26407 | 2 | 100 | 2 | 10 | 1 | Nucleotide Metabolism | ||
| Alpha-1,4-glucan-protein synthase [UDP-forming] | Z. mays | P80607 | 41206 | 3 | 100 | 17 | 35 | 1 | 1 | 1 | Cellulose Biosynthesis |
| Aspartate aminotransferase, cytoplasmic | D. carota | P28734 | 44175 | 5 | 100 | 5 | 12 | 1 | 1 | Amino Acid Metabolism | |
| Calmodulin | T. aestivum | P04464 | 16847 | 6 | 100 | 20 | 74 | 1 | 1 | 1 | Enzyme Mediator |
| Calreticulin-2 | A. thaliana | Q38858 | 48159 | 3 | 100 | 8 | 17 | 1 | Protein Folding | ||
| Cell division cycle protein 48 homolog | G. max | P54774 | 89772 | 6 | 100 | 25 | 30 | 1 | 1 | 1 | Cell Cycle Metabolism |
| Citrate synthase, mitochondrial | F. ananassa | P83372 | 52284 | 3 | 100 | 8 | 17 | 1 | 1 | 1 | Citrate Metabolism |
| Clathrin heavy chain 2 | A. thaliana | Q0WLB5 | 193276 | 6 | 100 | 31 | 14 | 1 | 1 | 1 | Endocytosis |
| Cytochrome c oxidase subunit 2 | A. thaliana | P93285 | 29675 | 4 | 100 | 5 | 21 | 1 | 1 | 1 | Redox-Electron Transport |
| Dihydrolipoyl dehydrogenase (Fragment) | S. lycopersicum | P80503 | 3912 | 2 | 100 | 2 | 78 | 1 | 1 | Redox Alpha Keto Acids | |
| Elongation factor 1-alpha | O. sativa.jap | O64937 | 49294 | 3 | 100 | 25 | 40 | 1 | 1 | 1 | Protein Biosynthesis |
| Eukaryotic initiation factor 4A-1 | O. sativa.jap | P35683 | 47088 | 2 | 100 | 13 | 36 | 1 | 1 | Translation | |
| Fructokinase-2 | O. sativa. ind | A2YQL4 | 35518 | 2 | 100 | 5 | 12 | 1 | 1 | 1 | Starch Biosynthesis |
| GTP-binding protein SAR1A | A. thaliana | O04834 | 22032 | 5 | 100 | 12 | 54 | 1 | 1 | 1 | Vesicle-mediated Transport |
| Glutamate decarboxylase | P. hybrida | Q07346 | 56726 | 4 | 100 | 13 | 20 | 1 | 1 | 1 | Amino Acid Metabolism |
| Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic | Z. mays | Q09054 | 36542 | 2 | 100 | 10 | 32 | 1 | 1 | 1 | Glycolysis |
| Guanosine nucleotide diphosphate dissociation inhibitor | A. thaliana | Q9LXC0 | 49551 | 6 | 100 | 19 | 21 | 1 | 1 | 1 | Regulate Transport |
| Heat shock protein 81-1 | O. sativa. ind | A2YWQ1 | 80198 | 4 | 100 | 35 | 36 | 1 | Stress Response | ||
| Histone H4 | G. max | P0CG89 | 11410 | 9 | 100 | 13 | 60 | 1 | 1 | 1 | Nucleosome Assembly |
| Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) | M. sativa | Q40345 | 48385 | 4 | 100 | 9 | 21 | 1 | 1 | 1 | Glyoxylate Cycle |
| Luminal-binding protein | S. lycopersicum | P49118 | 73237 | 2 | 100 | 41 | 41 | 1 | 1 | 1 | ER Chaperone |
| Malate dehydrogenase 1, mitochondrial | A. thaliana | Q9ZP06 | 35805 | 5 | 100 | 7 | 21 | 1 | 1 | TCA Cycle | |
| Mediator of RNA polymerase II transcription subunit 37f | A. thaliana | Q39043 | 73563 | 2 | 100 | 48 | 38 | 1 | 1 | 1 | Transcription Regulation |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial | A. thaliana | Q9FGI6 | 81526 | 6 | 100 | 6 | 12 | 1 | 1 | 1 | Electron Transport |
| Nucleoside diphosphate kinase B | F. bidentis | P47920 | 16200 | 2 | 100 | 10 | 36 | 1 | 1 | 1 | Nucleotide Biosynthesis |
| Peptidyl-prolyl cis-trans isomerase | C. roseus | Q39613 | 18285 | 4 | 100 | 8 | 44 | 1 | 1 | 1 | Protein Folding |
| Phosphoenolpyruvate carboxylase 1 | F. trinervia | Q9FV66 | 110418 | 2 | 100 | 13 | 15 | 1 | 1 | Carbon Fixation | |
| Phosphoglucomutase, cytoplasmic 2 | Z. mays | P93805 | 63042 | 4 | 100 | 10 | 21 | 1 | 1 | 1 | Glucose Metabolism |
| Phosphoglycerate kinase, cytosolic | N. tabacum | Q42962 | 42365 | 4 | 100 | 17 | 36 | 1 | 1 | 1 | Glycolysis |
| Phospholipase D alpha 1 | C. cardunculus | Q70EW5 | 91786 | 5 | 100 | 15 | 16 | 1 | 1 | 1 | Lipid Catabolism |
| Probable mediator of RNA polymerase II transcription subunit 37c | A. thaliana | P22954 | 71388 | 3 | 100 | 27 | 31 | 1 | 1 | 1 | Transcription Regulation |
| Proteasome subunit alpha type-5-A | A. thaliana | O81149 | 25947 | 4 | 100 | 4 | 23 | 1 | 1 | Protein Catabolism | |
| Putative vesicle-associated membrane protein 726 | A. thaliana | Q9MAS5 | 24874 | 4 | 100 | 6 | 17 | 1 | 1 | Exocytosis | |
| Pyruvate decarboxylase 2 | N. tabacum | P51846 | 67057 | 2 | 100 | 7 | 10 | 1 | 1 | 1 | Aerobic Fermentation |
| Ras-related protein RABB1c | A. thaliana | P92963 | 23165 | 7 | 100 | 7 | 42 | 1 | 1 | 1 | Protein Transport |
| Ribulose bisphosphate carboxylase small chain, chloroplastic | H. annuus | P08705 | 20212 | 4 | 100 | 7 | 30 | 1 | Reductive Pentose Phosphate Pathway | ||
| Soluble inorganic pyrophosphatase | O. sativa. ind | A2X8Q3 | 24160 | 3 | 100 | 8 | 16 | 1 | 1 | Phosphate Metabolism | |
| Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial | A. thaliana | O82663 | 69658 | 3 | 100 | 9 | 15 | 1 | TCA Cycle | ||
| Superoxide dismutase [Cu-Zn] | S. canadensis | O04996 | 15436 | 3 | 100 | 4 | 22 | 1 | 1 | 1 | Antioxidant Defense |
| Triosephosphate isomerase, cytosolic (Fragment) | L. sativa | P48493 | 20540 | 5 | 100 | 9 | 50 | 1 | 1 | 1 | Glucose Metabolism |
| Tubulin alpha chain | P. dulcis | P33629 | 49653 | 11 | 100 | 13 | 26 | 1 | 1 | 1 | Microtubule Based Process |
| UDP-glucose 6-dehydrogenase 4 | A. thaliana | Q9FM01 | 53098 | 2 | 100 | 6 | 15 | 1 | 1 | Carbohydrate Metabolism | |
| UTP--glucose-1-phosphate uridylyltransferase | S. tuberosum | P19595 | 51876 | 2 | 100 | 10 | 18 | 1 | 1 | 1 | UDP-Glucose Metabolism |
| V-type proton ATPase catalytic subunit A | G. hirsutum | P31405 | 68524 | 2 | 100 | 33 | 48 | 1 | 1 | ATP Metabolism | |
| Vesicle-fusing ATPase | A. thaliana | Q9M0Y8 | 81490 | 10 | 100 | 13 | 16 | 1 | 1 | 1 | Golgi Vesicle Docking |
^
Column abbreviations: DBSP, Num, Mr, EUP, PID%, TS, COV%, C, G, W are: database species, accession number, molecular mass, number of exclusively unique peptides, percent probable protein identification, total spectrum count, percentage coverage, and common/short, giant, and western ragweed plants; numbers in columns C, G, W indicate protein presence.