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. 2017 Jun 30;8:1219. doi: 10.3389/fmicb.2017.01219

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Copyright © 2017 Kinoti, Constable, Nancarrow, Plummer and Rodoni.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Neighbor-joining phylogenetic relationship of 324 American plum line pattern virus (APLPV), 172 Apple mosaic virus (ApMV), 210 Prune dwarf virus (PDV), 26,057 Prunus necrotic ringspot virus (PNRSV), 5,634 Ilarvirus-S1 and 1,390 Ilarvirus-S2 pooled sequence variants and the corresponding GenBank sequences of isolates of each virus (Table S3). The phylogenetic tree was constructed using Phylip version 3.6 with 1,000 bootstrap replicates and branches with <50% bootstrap support were collapsed. The branch position of the sequence variants of each Ilarvirus species from this study are in bold letters, the number of samples and variants are indicated in brackets and their branches collapsed for ease of presentation (Table 5). Each of the Ilarvirus type species is indicated in red font.