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. 2017 Jun 30;8:85. doi: 10.3389/fgene.2017.00085

Table 1.

The numbers of places, transitions, and TIs in the modules and in the reduced network.

PN size Sucrose module Citrate module Reduced PN
Places 69 72 60
Transitions 132 125 131
TI type
All 4,602 3,214 27,646
Trivial 31 25 22
IN + OUT 4,473 3,140 26,095
IN 18 41 1,298
OUT 63 0 132
Cyclic 17 8 99

All networks were CTI. We grouped the TIs according to the type of interface to the environment. INOUT TIs contained input and output transitions, IN TIs only input transitions, and OUT TIs only output transitions. Cyclic TIs contained neither IN nor OUT TIs. Trivial invariants were reversible reactions which were split into a forward and a backward transition.