Table 5.
Genes with branches where ω > 1 based on the free ratio model.
| Omega | Number of substitutions | Significance | |||||||||
| Gene | L | Pig | Mouse | Human | P(N) | P(S) | M(N) | M(S) | H(N) | H(S) | ω > 1 |
| NM_001866 | 80 | 2.130 | 0.434 | 0.535 | 9.8 | 1.9 | 11.5 | 11.0 | 12.0 | 9.3 | 0.4775 |
| NM_004085 | 97 | 1.088 | 0.053 | 0.000 | 2.0 | 0.5 | 4.9 | 24.1 | 0.0 | 8.8 | 0.9863 |
| NM_004549 | 122 | 0.570 | 0.276 | 1.615 | 15.2 | 10.2 | 25.7 | 35.5 | 28.9 | 6.8 | 0.4229 |
| NM_004891 | 65 | 0.092 | 0.116 | 2.560 | 2.9 | 11.6 | 8.1 | 25.1 | 10.1 | 1.4 | 0.5318 |
| NM_006607 | 187 | 0.261 | 0.281 | 2.117 | 24.6 | 38.0 | 54.7 | 78.4 | 31.0 | 5.9 | 0.3625 |
| NM_012198 | 216 | 0.341 | 0.073 | 1.849 | 24.9 | 26.5 | 18.3 | 91.6 | 29.4 | 5.8 | 0.3888 |
| NM_017425 | 147 | 0.594 | 0.424 | 1.110 | 33.5 | 18.7 | 39.3 | 30.8 | 21.2 | 6.3 | 0.8750 |
| NM_022978 | 60 | 0.228 | 0.143 | 1.102 | 2.8 | 4.4 | 3.3 | 8.0 | 38.9 | 12.5 | 0.8547 |
| NM_031268 | 72 | 1.307 | 1.009 | 2.307 | 5.5 | 1.3 | 5.6 | 1.8 | 8.2 | 1.1 | 0.4009 |
| NM_032353 | 97 | 0.539 | 2.100 | 0.964 | 5.71 | 4.3 | 22.0 | 4.3 | 7.1 | 3.0 | 0.1606 |
| NM_032731 | 123 | 1.576 | 0.299 | 0.146 | 12.5 | 2.9 | 27.9 | 33.6 | 5.6 | 13.8 | 0.6854 |
| XM_003044a | 118 | 1.022 | 0.172 | 0.042 | 22.1 | 9.1 | 21.7 | 53.1 | 1.6 | 15.6 | 0.9743 |
| XM_016532 | 155 | 0.000 | 0.125 | 1.193 | 0.0 | 34.0 | 16.0 | 49.0 | 11.4 | 3.6 | 0.8863 |
| XM_041680a | 168 | 0.415 | 0.186 | 1.079 | 29.4 | 25.5 | 33.1 | 64.0 | 6.7 | 2.2 | 0.9673 |
| XM_062742a | 110 | 0.000 | 0.011 | 1.661 | 0.0 | 19.0 | 1.0 | 36.4 | 22.9 | 5.4 | 0.5119 |
| XM_069411 | 187 | 0.085 | 0.058 | 1.108 | 3.7 | 15.9 | 5.5 | 34.9 | 119.9 | 39.6 | 0.6943 |
| XM_092681 | 81 | 0.187 | 0.040 | 1.167 | 5.3 | 10.0 | 3.0 | 26.0 | 15.9 | 4.8 | 0.8551 |
| XM_165930a | 102 | ∞ | 2.061 | 0.691 | 24.7 | 0.0 | 32.9 | 5.1 | 10.2 | 4.7 | 0.0020* |
| XM_166695a | 190 | 0.235 | 0.067 | 1.183 | 19.8 | 30.9 | 12.5 | 38.3 | 79.6 | 24.7 | 0.6657 |
| XM_168460a | 74 | 2.672 | 0.848 | 1.085 | 10.4 | 2.3 | 23.9 | 15.6 | 6.6 | 3.4 | 0.9234 |
| XM_172026a | 72 | 0.035 | 0.042 | 2.213 | 0.9 | 8.8 | 2.1 | 17.3 | 30.1 | 4.7 | 0.2564 |
| XM_172342a | 143 | 0.000 | 0.032 | 1.320 | 0.0 | 3.0 | 2.0 | 20.3 | 27.3 | 6.6 | 0.6075 |
| XM_172363a | 77 | 0.139 | 0.132 | 1.077 | 8.7 | 21.0 | 8.6 | 22.0 | 14.4 | 4.5 | 0.9422 |
Three-species alignments where one or more lineages have a dN/dS ratio larger than one. (Gene) Genbank accession number of the human gene. (L) Length of sequence alignment in codons, P(N) number of nonsynonymous substitutions in pig, P(S) number of synonymous substitutions in pig, M(N), M(S) and H(N), H(S) represents the mouse and human lineage respectively. (a)Possible pseudogenes in human lineage. (ω > 1) If more than one branch have ω > 1 only the significance of the branch with the largest value of ω is shown. (*) LRT (ω > 1) significant at 0.01 level.