Table 3.

Repeated sequences in the M. rubra-GZMZ chloroplast genome.

Repeat no.	Repeat size (bp)	Repeat start 1	Repeat start 2	Type	Location of repeat 1	Location of repeat 2
1	30	136188	136219	F	rrn5S/rrn4.5S∗	rrn5S/rrn4.5S∗
2	30	133974	133974	P	ycf1	ycf1
3	30	114157	114157	P	ycf1	ycf1
4	30	114157	133974	F	ycf1	ycf1
5	30	111943	136219	P	rrn4.5S/rrn5S∗	rrn5S/rrn4.5S∗
6	30	111912	111943	F	rrn4.5S/rrn5S∗	rrn4.5S/rrn5S∗
7	30	111912	136188	P	rrn4.5S/rrn5S∗	rrn5S/rrn4.5S∗
8	30	47244	102983	F	ycf3	rps12/trnV-GAC∗
9	30	47244	145148	P	ycf3	trnV-GAC/rps12∗
10	30	42178	44402	F	psaB	psaA
11	30	39386	39402	F	psbZ/trnG-GCC∗	psbZ/trnG-GCC∗
12	30	38558	49028	P	trnS-UGA	trnS-GGA
13	30	34469	34469	P	trnT-GGU/psbD∗	trnT-GGU/psbD∗
14	30	9267	49028	P	trnS-GCU	trnS-GGA
15	31	126455	126455	P	ndhA (intron)	ndhA (intron)
16	31	117134	117134	P	ndhF/rpl32∗	ndhF/rpl32∗
17	31	34994	118170	C	trnT-GGU/psbD∗	rpl32/trnL-UAG∗
18	31	34994	118161	R	trnT-GGU/psbD∗	rpl32/trnL-UAG∗
19	31	9263	38554	F	trnS-GCU	psbC/trnS-UGA∗
20	32	154596	154617	F	ycf2	ycf2
21	32	132804	132804	P	ycf1	ycf1
22	32	93533	154617	P	ycf2	ycf2
23	32	93512	93533	F	ycf2	ycf2
24	32	93512	154596	P	ycf2	ycf2
25	33	125664	125664	P	ndhA (intron)	ndhA (intron)
26	34	125872	125878	P	ndhA (intron)	ndhA (intron)
27	34	124227	124227	P	ndhG/ndhI∗	ndhG/ndhI∗
28	34	16216	16228	F	atpH/atpI∗	atpH/atpI∗
29	37	47232	125426	F	ycf3	ndhA (intron)
30	39	125424	145153	P	ndhA (intron)	trnV-GAC/rps12∗
31	39	102969	125424	F	rps12/trnV-GAC∗	ndhA (intron)
32	39	47232	102971	F	ycf3	rps12/trnV-GAC∗
33	39	47232	145151	P	ycf3	trnV-GAC/rps12∗
34	41	152170	152188	F	ycf2	ycf2
35	41	95950	152188	P	ycf2	ycf2
36	41	95932	95950	F	ycf2	ycf2
37	41	95932	152170	P	ycf2	ycf2
38	44	78648	78648	P	psbT/psbN∗	psbT/psbN∗
39	57	6935	6935	P	rps16/trnQ-UUG∗	rps16/trnQ-UUG∗

Type are F (Forward), P (palindromic), C (complement), and R (reverse) repeats.

^∗intergenic space.