Table 1.
Strains included in the phylogenetic analyses.
| GenBank Accession no.2 | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Species | Isolate nr.1 | Substrate | Locality | ITS | LSU | his3 | rpb2 | tef1 | tub2 |
| Campylocarpon fasciculare | CBS 112613; CPC 3970 | Vitis vinifera | South Africa | AY677301 | HM364313 | – | – | JF735691 | AY677221 |
| C. pseudofasciculare | CBS 112679; CPC 5472 | V. vinifera | South Africa | AY677306 | HM364314 | – | – | JF735692 | AY677214 |
| Cinnamomeonectria cinnamomea | CBS 136783; PC 1222 | Bark | Brazil | KJ021998 | KJ022049 | – | – | KJ022376 | KJ022344 |
| IMI 325248; G.J.S. 86-117 | Bark of living liana | French Guiana | KJ022010 | KJ022072 | – | – | KJ022393 | KJ022341 | |
| Cylindrocarpostylus gregarius | CBS 101072 | Hylurgops palliatus | Germany | KM231747 | JQ666084 | – | – | KM231870 | KM232005 |
| CBS 101073 | Pinus sylvestris | Germany | KM231748 | JQ666083 | – | – | KM231871 | KM232006 | |
| Cylindrodendrum album | CBS 301.83; ATCC 46842; IMI 255534 | Fucus distichus | Canada | KM231764 | KM231626 | – | – | KM231889 | KM232021 |
| CBS 110655 | Soil | The Netherlands | KM231765 | KM231627 | – | – | KM231890 | KM232022 | |
| Dactylonectria alcacerensis | CBS 129087 | V. vinifera | Portugal | JF735333 | KM231629 | – | – | JF735819 | AM419111 |
| D. estremocensis | CBS 129085 | V. vinifera | Portugal | JF735320 | KM231630 | – | – | JF735806 | JF735448 |
| D. macrodidyma | CBS 112615; CPC 3976 | V. vinifera | South Africa | AY677290 | KM515900 | – | – | JF735836 | AY677233 |
| D. torresensis | CBS 129086 | V. vinifera | Portugal | JF735362 | KM231631 | – | – | JF735870 | JF735492 |
| Ilyonectria capensis | CBS 132815; CPC 20695 | Protea sp. | South Africa | JX231151 | KM515908 | – | – | JX231119 | JX231103 |
| I. destructans | CBS 264.65 | Cyclamen persicum | Sweden | AY677273 | KM515927 | – | – | JF735695 | AY677256 |
| I. leucospermi | CBS 132809; CPC 20701 | Leucospermum sp. | South Africa | JX231161 | KM515917 | – | – | JX231129 | JX231113 |
| I. liriodendri | CBS 117527 | V. vinifera | Portugal | DQ178165 | KM515922 | – | – | JF735698 | DQ178172 |
| I. mors-panacis | CBS 306.35 | Panax quinquefolium | Canada | JF735288 | – | – | – | JF735746 | JF735414 |
| I. palmarum | CBS 135753 | Howea forsteriana | Italy | HF937432 | – | – | – | HF922615 | HF922609 |
| I. strelitziae | CBS 142253; ST6 | Strelitzia reginae | Italy | KY304649 | KY304674 | KY304621 | KY304701 | KY304727 | KY304755 |
| CBS 142254; ST8 | S. reginae | Italy | KY304651 | KY304676 | KY304623 | KY304703 | KY304729 | KY304757 | |
| ST7 | S. reginae | Italy | KY304650 | KY304675 | KY304622 | KY304702 | KY304728 | KY304756 | |
| ST9 | S. reginae | Italy | KY304652 | KY304677 | KY304624 | KY304704 | KY304730 | KY304758 | |
| ST14 | S. reginae | Italy | KY304657 | KY304682 | KY304629 | – | KY304735 | KY304763 | |
| ST15 | S. reginae | Italy | KY304658 | KY304683 | KY304630 | KY304708 | KY304736 | KY304764 | |
| ST25 | S. reginae | Italy | KY304668 | KY304693 | KY304640 | KY304718 | KY304746 | KY304774 | |
| ST26 | S. reginae | Italy | KY304669 | KY304694 | KY304641 | KY304719 | KY304747 | KY304775 | |
| ST27 | S. reginae | Italy | KY304670 | KY304695 | KY304642 | KY304720 | KY304748 | KY304776 | |
| ST28 | S. reginae | Italy | KY304671 | KY304696 | KY304643 | KY304721 | KY304749 | KY304777 | |
| Macronectria jungneri | CBS 136792 | Bark | Brazil | KJ021997 | KJ022048 | – | – | KJ022375 | KJ022313 |
| M. magna | CBS 213.59 | Theobroma cacao | Guatemala | KJ021981 | KJ022034 | – | – | KJ022361 | KJ022300 |
| M. venezuelana | CBS 136786; G.J.S. 09-1343 | Wood | Venezuela | KJ021986 | KJ022037 | – | – | KJ022365 | KJ022303 |
| Neonectria candida | CBS 151.29; IMI 113893 | Malus sylvestris | England | JF735313 | HM042436 | – | – | JF735791 | JF735438 |
| N. ditissima | CBS 100316 | M. domestica | Ireland | KM515890 | KM515935 | – | – | KM515944 | DQ789858 |
| N. lugdunensis | CBS 125185; DAOM 235831 | Populus fremontii | USA | KM231762 | KM231625 | – | – | KM231887 | KM232019 |
| N. neomacrospora | CBS 324.61 | Abies concolor | The Netherlands | JF735312 | HM364318 | – | – | HM364335 | DQ789875 |
| Pleiocarpon strelitziae | CBS 142251; ST1; CPC 27628 | S. reginae | Italy | KY304644 | KY304672 | KY304616 | KY304697 | KY304722 | KY304750 |
| CBS 142252; ST20 | S. reginae | Italy | KY304663 | KY304688 | KY304635 | KY304713 | KY304741 | KY304769 | |
| CPC 27629 | S. reginae | Italy | KY304645 | – | KY304617 | KY304698 | KY304723 | KY304751 | |
| ST3 | S. reginae | Italy | KY304646 | – | KY304618 | – | KY304724 | KY304752 | |
| ST4 | S. reginae | Italy | KY304647 | – | KY304619 | KY304699 | KY304725 | KY304753 | |
| ST5 | S. reginae | Italy | KY304648 | KY304673 | KY304620 | KY304700 | KY304726 | KY304754 | |
| ST10 | S. reginae | Italy | KY304653 | KY304678 | KY304625 | KY304705 | KY304731 | KY304759 | |
| ST11 | S. reginae | Italy | KY304654 | KY304679 | KY304626 | KY304706 | KY304732 | KY304760 | |
| ST12 | S. reginae | Italy | KY304655 | KY304680 | KY304627 | KY304707 | KY304733 | KY304761 | |
| ST13 | S. reginae | Italy | KY304656 | KY304681 | KY304628 | – | KY304734 | KY304762 | |
| ST17 | S. reginae | Italy | KY304660 | KY304685 | KY304632 | KY304710 | KY304738 | KY304766 | |
| ST18 | S. reginae | Italy | KY304661 | KY304686 | KY304633 | KY304711 | KY304739 | KY304767 | |
| ST19 | S. reginae | Italy | KY304662 | KY304687 | KY304634 | KY304712 | KY304740 | KY304768 | |
| ST21 | S. reginae | Italy | KY304664 | KY304689 | KY304636 | KY304714 | KY304742 | KY304770 | |
| ST22 | S. reginae | Italy | KY304665 | KY304690 | KY304637 | KY304715 | KY304743 | KY304771 | |
| ST23 | S. reginae | Italy | KY304666 | KY304691 | KY304638 | KY304716 | KY304744 | KY304772 | |
| ST24 | S. reginae | Italy | KY304667 | KY304692 | KY304639 | KY304717 | KY304745 | KY304773 | |
| Rugonectria neobalansae | CBS 125120 | Dead tree | Indonesia | KM231750 | HM364322 | – | – | KM231874 | HM352869 |
| R. rugulosa | CBS 126565 | Dead tree | Venezuela | KM231749 | KM231615 | – | – | KM231873 | KM232007 |
| Thelonectria discophora | CBS 134034; AR 4742 | Tepualia stipularis | Chile | KC153714 | KC121440 | – | – | KC153843 | KC153779 |
| T. olida | CBS 215.67; ATCC 16548; IMI 116873 | Asparagus officinalis | Germany | KJ021982 | KJ022058 | – | – | – | KM232024 |
| CBS 142255 | S. reginae | Italy | KY304659 | KY304684 | KY304631 | KY304709 | KY304737 | KY304765 | |
| T. rubi | CBS 113.12; IMI 113918 | Rubus idaeus | KC153718 | KC121444 | – | – | KC153847 | KC153783 | |
| T. trachosa | CBS 112467; IMI 352560 | Bark of conifer | Scotland | AY677297 | HM364312 | – | – | KM231896 | AY677258 |
| T. veuillotiana | CBS 132341; AR 1751 | Eucalyptus sp. | Azores | JQ403305 | JQ403345 | – | – | JQ394734 | JQ394698 |
| Tumenectria laetidisca | CBS 100284 | Bamboo | Japan | KJ022017 | KJ022066 | – | – | KJ022400 | KJ022336 |
| CBS 101909 | Bamboo | Jamaica | KJ022018 | KJ022067 | – | – | KJ022401 | KJ022337 | |
| Xenogliocladiopsis cypellocarpa | CBS 133814; CPC 19417 | Eucalyptus cypellocarpa | Australia | KM231760 | KM231623 | – | – | KM231885 | KM232017 |
1AR: Amy Y. Rossman working collection; ATCC: American Type Culture Collection, Virginia, USA; CBS: Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands; CPC: Pedro Crous working collection housed at CBS;DAOM: Agriculture and Agri-Food Canada National Mycological Herbarium, Canada; G.J.S.: G.J. Samuels working collection; IMI: International Mycological Institute, CABI-Bioscience, Egham, Bakeham Lane, UK; PC: P. Chaverri working collection; ST: D. Aiello personal culture numbers. 2ITS = internal transcribed spacers and intervening 5.8S rDNA, LSU = 28S large subunit ribosomal rDNA, his3 = histone H3, rpb2 = RNA polymerase II largest subunit, tef1 = translation elongation factor 1-alpha, tub2 = β-tubulin. Epi- and ex-type isolates indicated in bold. Sequences generated in this study indicated in italics.