Table 1.
Features of the 25 most abundant representative RNA fragments
| Sequence | Length | Parental RNA | RNA class | Fragment type | Relative abundance | |||
|---|---|---|---|---|---|---|---|---|
| 72C | 72I | 96C | 96I | |||||
| CACCACGUUCCCGUGG | 16 | Putative conserved non-coding region (RNAz) | other | n/ab | 164.31% | 137.42% | 97.74% | 81.31% |
| GUUUGUGAUGACUUACA | 17 | C/D box snoRNA, SNORD30/U30 | snoRNA | box C | 147.21% | 109.31% | 73.54% | 139.20% |
| UCGUACGACUCUUAGCGG | 18 | Homo sapiens tRNaseZL-interacting RNA B2 | other | n/a | 106.20% | 77.68% | 59.03% | 112.86% |
| GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCU | 33 | tRNA, AAC (Val) | tRNA | tRF-5A | 94.61% | 85.11% | 226.16% | 296.63% |
| CUGGAUGAUGAUAAGCAAAUGCUGACUGAAC | 31 | C/D box snoRNA, SNORD44/U44 | snoRNA | box C | 49.19% | 35.07% | 36.15% | 41.96% |
| ACCACGUUCCCGUGG | 15 | Putative conserved non-coding region (RNAz) | other | n/a | 39.10% | 39.74% | 47.31% | 33.02% |
| GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUC | 34 | tRNA, CAC (Val) | tRNA | tRF-5A | 30.75% | 15.72% | 51.93% | 31.72% |
| UUGCUGUGAUGACUAUCUUAGGACACCUU | 29 | C/D box snoRNA, SNORD58/U58 | snoRNA | box C, guide sequence 1 | 28.55% | 20.87% | 13.10% | 22.32% |
| CCUGUGAACUCAAAAGGCUCUUUUCAGAGCCACU | 34 | mRNA, HIST2H2AA3 | mRNA | n/a | 26.32% | 17.69% | 13.46% | 12.49% |
| GGUCCAGGAUGAAACCUAAUUUGAGUGGACAUCCAUGGAUGAGAAAUGCGGAUAUGGGACUGAGA | 65 | C/D box snoRNA, HBII-420/SNORD99 | snoRNA | box C, D, guide sequence 1 | 26.20% | 24.58% | 24.72% | 27.16% |
| GUACGACUCUUAGCGG | 16 | tRNA, AGT (Thr) | tRNA | tRF-Δ5T-Δ3AA | 24.37% | 19.51% | 17.18% | 32.54% |
| CCUGGAUGAUGAUAAGCAAAUGCUGACU | 28 | C/D box snoRNA, SNORD44/U44 | snoRNA | box C | 18.02% | 16.31% | 27.18% | 28.47% |
| GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUC | 34 | tRNA, CTT (Lys) | tRNA | tRF-5A | 17.80% | 8.89% | 24.82% | 15.98% |
| UGAGCAUGUAGACAAAGGUAACACUGAAG | 29 | C/D box snoRNA, SNORD78/U78 | snoRNA | box D | 17.68% | 18.08% | 20.05% | 24.69% |
| GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUCCCACGCGGGAGACCCGGGU | 52 | tRNA, CCC (Gly) | tRNA | tRF-5T | 15.24% | 6.89% | 11.55% | 15.44% |
| AAUACAUGAUGAUCUCAAUCCAACUUGAACUCUCUCACUGAUUACUUGAUGACAAUAAAAUAUCUGAUA | 69 | C/D box snoRNA, SNORD81/U81/Z23 | snoRNA | box C, D, D’, guide sequence 1 | 14.77% | 18.35% | 12.49% | 16.56% |
| UAUUGCACUUGUCCCGGCCUGUUA | 24 | Putative conserved non-coding region (RNAz) | other | n/a | 13.01% | 13.20% | 15.07% | 13.80% |
| GGCUGGUCCGAUGGUAGUGGGUUAUCAGAACU | 32 | hy4 Ro RNA | Y RNA | Ro60 binding region | 11.65% | 29.69% | 15.19% | 38.64% |
| GCAUUGGUCGUUCAGUGGUAGAAUUCUCGCCU | 32 | tRNA, CCC (Gly) | tRNA | tRF-5A | 11.58% | 16.71% | 31.53% | 58.67% |
| UCCACCACGUUCCCGUGG | 18 | Putative conserved non-coding region (RNAz) | other | n/a | 9.42% | 12.81% | 18.59% | 8.16% |
| GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUGC | 34 | tRNA, GCC (Gly) | tRNA | tRF-5A | 9.37% | 6.50% | 21.50% | 20.20% |
| GCUUCUGUAGUGUAGUGGUUAUCACGUUCGCCU | 33 | tRNA, CAC (Val) | tRNA | tRF5A | 9.04% | 6.33% | 19.65% | 21.11% |
| GCAUUGUGGUUCAGUGGUAGAAUUCUCGC | 29 | tRNA, GCC (Gly) | tRNA | tRF-5A | 6.58% | 10.57% | 15.96% | 36.65% |
| GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGU | 52 | tRNA, GCC (Gly) | tRNA | tRF-5T | 4.78% | 5.57% | 10.11% | 21.10% |
| CCCCCCACUGCUAAAUUUGACUGa | 23 | hy4 Ro RNA | Y RNA | Ro60 binding region | 4.03% | 16.11% | 5.51% | 44.43% |
adifferentially accumulated at 96 hpi
bnot applicable