Table 3.
Features of the 26 representative RNA fragments with log2FC > 5a
| Sequence | Length | Parental RNA | RNA class | Fragment type | log2FC 72 hpib | log2FC 96 hpib | Relative abundance | |||
|---|---|---|---|---|---|---|---|---|---|---|
| 72C | 72I | 96C | 96I | |||||||
| AAACUCGACUGCAUAAUUUGUGGUAGUGGGGGACUG | 36 | U1 spliceosomal RNA | snRNA | Sm binding | 5.14 | 11.59 | 0.00% | 0.01% | 0.00% | 0.26% |
| AUGUGGGAAACUCGACUGCAUAAUUUGUGGUAGUGGGGGA | 40 | U1 spliceosomal RNA | snRNA | Sm binding | 7.27 | 11.33 | 0.00% | 0.01% | 0.00% | 0.21% |
| AAUGUGGGAAACUCGACUGCAUAAUUUGUGGUAGUGGGGGACU | 43 | U1 spliceosomal RNA | snRNA | Sm binding | 8.36 | 9.93 | 0.00% | 0.34% | 0.00% | 3.09% |
| ACCCCACGUCUCGUCGCG | 18 | FGF-2 internal ribosome entry site (IRES) | other | n/ac | 6.54 | 9.45 | 0.00% | 0.04% | 0.00% | 0.26% |
| GGUCCGCCGGCCCUG | 15 | Putative conserved non-coding region (EvoFold) | other | n/a | 6.90 | 9.35 | 0.00% | 0.05% | 0.00% | 0.27% |
| AAACUCGACUGCAUAAUUUGUGGUAGUGGGGGACU | 35 | U1 spliceosomal RNA | snRNA | Sm binding | 5.70 | 9.02 | 0.01% | 0.40% | 0.01% | 5.00% |
| ACUCGACUGCAUAAUUUGUGGUAGUGGGGGACUG | 34 | U1 spliceosomal RNA | snRNA | Sm binding | 5.67 | 9.00 | 0.00% | 0.19% | 0.01% | 2.55% |
| AUGUGGGAAACUCGACUGCAUAAUUUGUGGUAGUGGGG | 38 | U1 spliceosomal RNA | snRNA | Sm binding | 6.71 | 8.92 | 0.00% | 0.25% | 0.01% | 2.89% |
| CUGGCAGGGGAGAUACCAUGAUCACGAAGGUGGUUUUCCCAGGGC | 45 | U1spliceosomalRNA | snRNA | no functional region | 6.49 | 8.45 | 0.00% | 0.07% | 0.00% | 0.93% |
| GAGUUCUGGGCUGUAGUGCGCU | 22 | 7S RNA | other | n/a | 4.67 | 8.33 | 0.00% | 0.06% | 0.00% | 0.29% |
| UGGGCAGGAGAUGCCGUGGACCCC | 24 | Nuclear RNase P | other | n/a | 5.22 | 8.18 | 0.00% | 0.03% | 0.00% | 0.29% |
| UCACCCGGCCCGGACACG | 18 | piRNA | other | n/a | 5.07 | 8.18 | 0.01% | 0.34% | 0.01% | 4.13% |
| GGGACUGACCUGAAAUGAAGAGAAUACU | 28 | C/D box snoRNA, SNORD2/snR39B | snoRNA | box D’ | 4.20 | 7.88 | 0.00% | 0.02% | 0.00% | 0.30% |
| ACUCGACUGCAUAAUUUGUGGUAGUGGGG | 29 | U1 spliceosomal RNA | snRNA | Sm binding | 5.22 | 7.82 | 0.02% | 0.58% | 0.03% | 7.43% |
| AUUGCACUCCGGAUGUGCUGACCCCU | 26 | U1 spliceosomal RNA | snRNA | no functional region | 4.88 | 6.87 | 0.00% | 0.06% | 0.00% | 0.46% |
| AUUGCACUCCGGAUGUGCUGACCCCUGCGAUUUCCCCAAAUGUGG | 45 | U1 spliceosomal RNA | snRNA | no functional region | 4.21 | 6.49 | 0.00% | 0.04% | 0.00% | 0.26% |
| UCACCCGGCCCGGAC | 15 | piRNA | other | n/a | 5.02 | 6.31 | 0.01% | 0.25% | 0.02% | 1.76% |
| ACCCAGGCGGCCCGGGUUCGACUCCCGGUGUG | 32 | tRNA, TTC (Glu) | tRNA | tRF-Δ5A-Δ3AA | 5.62 | 6.14 | 0.00% | 0.04% | 0.00% | 0.30% |
| GCGCGCCGGCCGGGCG | 16 | Putative conserved non-coding region (EvoFold) | other | n/a | 4.26 | 5.69 | 0.01% | 0.26% | 0.04% | 1.89% |
| UUUUACGGAUCUGGCUUCUGAGA | 23 | C/D box snoRNA, SNORD50/U50A | snoRNA | box D, guide sequence | 1.36 | 5.65 | 0.03% | 0.07% | 0.01% | 0.57% |
| CACGCAUCGACCUGGUAUUGCAGUACCUCCAGGAACGG | 38 | U2 spliceosomal RNA | snRNA | no functional region | 2.62 | 5.47 | 0.05% | 0.31% | 0.04% | 1.78% |
| UAGCUCUAGAAUUACUCUGAGACCU | 25 | C/D box snoRNA, SNORD45/U45 | snoRNA | box D | 0.90 | 5.30 | 0.03% | 0.05% | 0.01% | 0.31% |
| AUACAUGAUGAUCUCAAUCCAACUUGAACUCU | 32 | C/D box snoRNA, SNORD81/U81/Z23 | snoRNA | box C | 2.82 | 5.13 | 0.01% | 0.06% | 0.01% | 0.34% |
| AAUCUGUAGUCUUGGAGCCGCACAGGGUUGGUGGUACCCUCG | 42 | scaRNA, scaRNA13/U93 | snoRNA | no functional region | 1.72 | 5.11 | 0.03% | 0.11% | 0.02% | 0.85% |
| ACUUUAGCUCUAGAAUUACUCUGAGACCU | 29 | C/D box snoRNA, SNORD45/U45 | snoRNA | box D, guide sequence | 2.00 | 5.05 | 0.09% | 0.35% | 0.06% | 2.14% |
| AGAAAUAUGUCUGAUAAAAGAUUUACUUUGAUAGAGUAAAUAAUAGGAGCU | 51 | tRNA, GAT (Ile) | tRNA | tRF-5T | 1.47 | 5.00 | 0.02% | 0.07% | 0.01% | 0.33% |
aat least at 96 hpi (FDR < 0.05; sorted by log2FC at 96 hpi)
bdifferentially accumulated are marked with boldtype
cnot applicable