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Proportion of pairwise isolates sharing a given trait (country or genotype) as a function of genomic divergence for the well-sampled urogenital lineages T1 (top) and T2 (bottom). (Top, left) For instance any pair of isolates less than approximately 400 mutations apart contain the same trait (country of isolation) in 50% of cases. (Red) Observed data; (blue) 100 permutations; (left) country of isolation; (right) genotype.
