Table S1.
Genes differentially expressed in Etaa1ΔEx2/ΔEx2 vs. Etaa1+/+ P14 cells at day 5 postinfection
| logFC | logCPM | P value | FDR | MGI symbol |
| 5.50 | 0.32 | 3.19E-41 | 6.62E-38 | Zfp750 |
| 5.26 | 0.98 | 2.68E-48 | 8.33E-45 | Tnfsf4 |
| 4.15 | 1.28 | 1.08E-43 | 2.51E-40 | Plk2 |
| 4.08 | 0.40 | 6.45E-30 | 7.07E-27 | Ak1 |
| 4.07 | 2.66 | 7.23E-108 | 6.74E-104 | Phlda3 |
| 3.81 | 1.64 | 1.45E-09 | 1.80E-07 | Hspa1b |
| 3.69 | 4.84 | 0.00E+00 | 0.00E+00 | Serpine2 |
| 3.41 | 1.07 | 3.06E-34 | 4.07E-31 | Zak |
| 3.21 | 1.24 | 3.23E-11 | 5.73E-09 | Tcrg-C4 |
| 2.61 | 0.92 | 4.28E-08 | 3.51E-06 | Trgv2 |
| 2.46 | 1.12 | 7.63E-16 | 2.79E-13 | Trim66 |
| 2.33 | 1.59 | 3.04E-14 | 9.28E-12 | Batf3 |
| 2.32 | 0.52 | 1.60E-07 | 1.14E-05 | Tcrg-C1 |
| 2.28 | 0.33 | 2.86E-09 | 3.42E-07 | Eng |
| 2.25 | 2.75 | 3.11E-40 | 5.80E-37 | Fam212b |
| 2.25 | 2.81 | 3.60E-32 | 4.20E-29 | Bbc3 |
| 2.19 | 0.44 | 2.75E-05 | 1.00E-03 | Capn11 |
| 2.19 | 2.82 | 5.67E-08 | 4.46E-06 | Tcrg-C2 |
| 2.11 | 2.79 | 2.16E-07 | 1.47E-05 | Fos |
| 2.00 | 2.28 | 9.31E-09 | 9.39E-07 | Xcl1 |
| 2.00 | 0.11 | 3.74E-12 | 7.58E-10 | Ahnak2 |
| 1.93 | 0.22 | 1.19E-11 | 2.21E-09 | Prrg4 |
| 1.90 | 1.91 | 1.74E-20 | 1.08E-17 | Tnfsf8 |
| 1.88 | 0.80 | 1.42E-05 | 5.78E-04 | Trbv29 |
| 1.85 | 1.40 | 4.78E-15 | 1.59E-12 | Nos1 |
| 1.85 | 5.99 | 5.13E-59 | 2.39E-55 | Cdkn1a |
| 1.85 | 3.40 | 4.10E-14 | 1.17E-11 | Jun |
| 1.79 | 0.79 | 3.11E-10 | 4.36E-08 | D630045J12Rik |
| 1.77 | 2.67 | 3.30E-32 | 4.10E-29 | Zfp365 |
| 1.75 | 1.86 | 9.20E-17 | 3.83E-14 | Cd81 |
| 1.72 | 3.35 | 5.15E-13 | 1.20E-10 | Lrp1 |
| 1.71 | 4.25 | 1.51E-38 | 2.16E-35 | 9030617O03Rik |
| 1.71 | 0.93 | 1.74E-10 | 2.61E-08 | Zfp385a |
| 1.68 | 1.76 | 2.61E-10 | 3.80E-08 | Fosb |
| 1.67 | 0.09 | 2.42E-05 | 9.05E-04 | mt-Tc |
| 1.63 | 0.71 | 5.03E-05 | 1.64E-03 | Trbv1 |
| 1.61 | 3.95 | 4.61E-47 | 1.23E-43 | Psrc1 |
| 1.56 | 0.94 | 2.67E-07 | 1.77E-05 | 5830418P13Rik |
| 1.54 | 0.67 | 5.91E-09 | 6.45E-07 | Sdc1 |
| 1.52 | 0.69 | 3.78E-03 | 4.68E-02 | Trbv13-1 |
| 1.52 | 3.06 | 9.23E-25 | 8.19E-22 | Maats1 |
| 1.49 | 0.76 | 1.17E-07 | 8.64E-06 | Mcam |
| 1.48 | 0.42 | 8.76E-06 | 3.77E-04 | Mx2 |
| 1.47 | 0.69 | 6.37E-06 | 2.87E-04 | Gm10382 |
| 1.47 | 1.98 | 1.06E-11 | 2.02E-09 | Dclk1 |
| 1.44 | 1.64 | 1.15E-12 | 2.46E-10 | Ephx1 |
| 1.42 | 2.98 | 3.92E-08 | 3.29E-06 | Tnfrsf10b |
| 1.41 | 0.73 | 1.00E-06 | 5.82E-05 | Cox6b2 |
| 1.40 | 7.66 | 6.80E-05 | 2.06E-03 | Gm43549 |
| 1.39 | 3.59 | 9.24E-17 | 3.83E-14 | Rgs16 |
| 1.37 | 1.44 | 1.20E-05 | 4.98E-04 | Egr2 |
| 1.37 | 7.59 | 3.78E-104 | 2.35E-100 | Ccng1 |
| 1.36 | 3.26 | 7.21E-16 | 2.69E-13 | Cd80 |
| 1.35 | 2.57 | 1.59E-16 | 6.18E-14 | Perp |
| 1.34 | 0.48 | 6.43E-05 | 1.97E-03 | Bmpr1a |
| 1.33 | 0.94 | 1.20E-03 | 2.05E-02 | Trbv16 |
| 1.32 | 4.43 | 1.04E-05 | 4.37E-04 | Ccl3 |
| 1.30 | 2.40 | 3.95E-12 | 7.84E-10 | Tnfrsf4 |
| 1.29 | 1.34 | 3.06E-07 | 2.00E-05 | Utf1 |
| 1.28 | 0.55 | 2.37E-04 | 5.77E-03 | Trbv20 |
| 1.26 | 4.81 | 2.45E-49 | 9.16E-46 | Zmat3 |
| 1.25 | 2.12 | 4.06E-14 | 1.17E-11 | Dcxr |
| 1.25 | 0.32 | 5.08E-05 | 1.66E-03 | Gm9522 |
| 1.23 | 3.46 | 8.46E-23 | 6.57E-20 | Snhg15 |
| 1.23 | 0.41 | 3.70E-06 | 1.80E-04 | Ogdhl |
| 1.23 | 1.80 | 5.88E-04 | 1.16E-02 | Trbv13-2 |
| 1.17 | 0.02 | 1.50E-04 | 4.02E-03 | Spint1 |
| 1.16 | 0.01 | 2.30E-03 | 3.26E-02 | Bst1 |
| 1.16 | 0.47 | 1.75E-05 | 6.89E-04 | Etv4 |
| 1.16 | 4.45 | 1.10E-04 | 3.11E-03 | Ccl4 |
| 1.15 | 0.36 | 1.14E-03 | 1.98E-02 | Tctex1d2 |
| 1.15 | 0.62 | 3.16E-05 | 1.11E-03 | Slc4a11 |
| 1.14 | 1.24 | 7.19E-06 | 3.19E-04 | Irak1bp1 |
| 1.13 | 1.39 | 3.35E-08 | 2.86E-06 | Map7 |
| 1.13 | 0.11 | 1.70E-03 | 2.60E-02 | Hectd2 |
| 1.13 | 3.57 | 4.36E-20 | 2.62E-17 | Slc19a2 |
| 1.10 | 0.32 | 4.87E-04 | 9.95E-03 | Rasal2 |
| 1.10 | 4.33 | 1.52E-12 | 3.18E-10 | Tnfrsf8 |
| 1.08 | 1.98 | 7.46E-07 | 4.49E-05 | Filip1 |
| 1.07 | 3.06 | 4.07E-11 | 7.03E-09 | Nebl |
| 1.07 | 5.71 | 2.17E-24 | 1.84E-21 | Mx1 |
| 1.07 | 1.08 | 6.94E-04 | 1.32E-02 | Siglec1 |
| 1.07 | 0.58 | 5.86E-05 | 1.84E-03 | Gm10451 |
| 1.06 | 0.07 | 2.60E-04 | 6.22E-03 | Cdc42bpb |
| 1.05 | 0.24 | 1.53E-03 | 2.44E-02 | Snord83b |
| 1.05 | 5.59 | 9.62E-16 | 3.45E-13 | Trp53inp1 |
| 1.04 | 1.29 | 4.85E-06 | 2.25E-04 | S100a3 |
| 1.04 | 1.47 | 2.35E-06 | 1.25E-04 | Cd200 |
| 1.04 | 5.27 | 4.77E-05 | 1.57E-03 | Ifng |
| 1.04 | 1.43 | 3.56E-03 | 4.47E-02 | Egr3 |
| 1.04 | 1.89 | 2.24E-06 | 1.19E-04 | Slc29a2 |
| 1.03 | 3.82 | 3.94E-06 | 1.90E-04 | Nr4a3 |
| 1.03 | 0.88 | 3.47E-04 | 7.75E-03 | Acsl3 |
| 1.01 | 3.17 | 1.70E-13 | 4.35E-11 | Plxna1 |
| −1.01 | 0.45 | 5.55E-04 | 1.11E-02 | Enho |
| −1.02 | 4.20 | 4.89E-08 | 3.95E-06 | Tppp3 |
| −1.13 | 1.83 | 4.90E-08 | 3.95E-06 | Crybb1 |
| −1.24 | 0.33 | 1.74E-04 | 4.52E-03 | Gm4208 |
| −1.27 | 3.17 | 6.09E-13 | 1.35E-10 | Epha8 |
| −1.28 | 2.40 | 9.25E-11 | 1.51E-08 | Srcin1 |
| −1.31 | 0.41 | 7.65E-04 | 1.42E-02 | Gm37829 |
| −1.33 | 0.36 | 8.59E-07 | 5.07E-05 | Gm11611 |
| −1.34 | 0.14 | 4.47E-05 | 1.49E-03 | Rsph10b |
| −1.41 | 2.35 | 1.49E-07 | 1.06E-05 | Ablim2 |
| −1.43 | 3.79 | 1.80E-21 | 1.20E-18 | S1pr5 |
| −1.57 | 0.05 | 3.62E-05 | 1.25E-03 | Gm38102 |
| −1.57 | 2.39 | 3.83E-09 | 4.38E-07 | Mir142hg |
| −1.60 | 5.93 | 1.21E-21 | 8.71E-19 | Cx3cr1 |
| −2.70 | 0.79 | 1.31E-10 | 2.07E-08 | Plagl1 |