Table 3.
Tree distances among phylogenies inferred using different approaches.
| Species | Genome vs MLST | SNP vs MLST | Genome vs SNP | |||
|---|---|---|---|---|---|---|
| Matching cluster | R-F cluster | Matching cluster | R-F cluster | Matching cluster | R-F cluster | |
| Burkholderia pseudomallei | 143 | 28 | 176 | 31 | 55 | 9 |
| Campylobacter jejuni | 156 | 25 | 176 | 24.5 | 62 | 7.5 |
| Chlamydia trachomatis | 436 | 57.5 | 466 | 58.5 | 102 | 18 |
| Escherichia coli 1 | 564 | 76.5 | 491 | 72.5 | 307 | 27 |
| Escherichia coli 2 | 531 | 74.5 | 564 | 70.5 | 307 | 27 |
| Helicobacter pylori | 257 | 45 | 212 | 42 | 171 | 32 |
| Klebsiella pneumoniae | 147 | 26 | 161 | 27 | 60 | 9 |
| Listeria monocytogenes | 112 | 28 | 124 | 28 | 48 | 8 |
| Staphylococcus aureus | 444 | 48 | 372 | 46.5 | 114 | 11.5 |
| Salmonella enterica | 1287 | 98.5 | 1242 | 97 | 214 | 31.5 |
| Streptococcus pyogenes | 95 | 17 | 127 | 17 | 72 | 7 |