Table 1.
Litters from Iberian lynx from Doñana National Park where paternity assignments were performed.
| Litters | Microsatellites | SNPs | ||||||
|---|---|---|---|---|---|---|---|---|
| Nucleus1 | Mother | Year | Spatial father2 | Other known males in the nucleus | Number genotyped kittens (total kittens in the litter) | Genetic father | Number genotyped kittens | Genetic father |
| CR | Nuria | 1995 | Borja (RT) | Maki, ungenotyped | 2 (3) | Borja | 0 | — |
| CR | Gloria | 1996 | Barro (RT) | Borja, Maki, ungenotyped | 2 (?) | Barro | 2 | Barro |
| CR | Gloria | 1997 | Barro (RT) | Maki, ungenotyped | 3 (3) | Barro | 1 | Barro |
| CR | Nuria | 1997 | Barro (RT) | Maki, ungenotyped | 1 (3) | Barro | 1 | Barro |
| CR | Iguazu | 2000 | Barro (CT) | Uda, Oscar | 1 (3) | NA3,4 | 1 | NA4 |
| CR | Roja | 2000 | Barro (CT) | Uda, Oscar | 2 (4) | Barro | 2 | Barro |
| CR | Escarlata | 2000 | Barro (CT) | Uda, Oscar | 1 (2) | Barro | 1 | Barro |
| CR | Viciosa | 2002 | Oscar (CT) | Barro, Uda | 3 (3) | Oscar | 2 | Uda |
| CR | Wari | 2004 | Uda (CT) | Oscar | 2 (2) | Uda | 1 | Uda |
| VE | Jabata II | 2006 | Pavon (RT) | — | 2 (2) | Pavon | 0 | — |
| CR | Wari | 2006 | Roman (RT) | Arrayan, Nati II | 2 (2) | Roman | 1 | Roman |
| CR | Rayuela | 2006 | Nati II (RT) | Roman, Arrayan | 2 (2) | Nati II | 0 | — |
| CR | Viciosa | 2006 | Arrayan (RT) | Roman, Nati II | 2 (2) | Arrayan | 0 | — |
| CR | Viciosa | 2007 | Arrayan (RT) | Roman, Nati II | 3 (3) | Arrayan | 0 | — |
| CR | Wari | 2007 | Roman (RT) | Arrayan, Nati II | 2 (3) | Roman | 0 | — |
| CR | Rayuela | 2007 | Nati II (RT) | Roman, Arrayan | 2 (2) | Nati II | 0 | — |
| CR | Viciosa | 2008 | Baya (RT) | — | 3 (3) | Baya | 2 | Baya |
| VE | Bonares | 2008 | Clavo (RT) | Boliche | 2 (2) | Clavo | 0 | — |
| CR | Wari | 2008 | Baya (RT) | — | 4 (4) | Baya | 3 | Baya |
| VE | Jabata II | 2008 | Boliche (RT) | Clavo | 2 (2) | Boliche | 0 | — |
Information on the nucleus in which the litter was located, the mother of the litter, the supposed father according to spatial data, the number of known adult males in the nucleus, the number of genotyped kittens by any method, total number of kittens in the litter (between brackets; ?=unknown) and paternity assignments using microsatellites and SNPs information. Paternity assignment for microsatellites was performed for two scenarios (not assuming and assuming monogamy of females). Detailed probabilities for all cases are shown in Supplementary Table S1. 1CR = Coto del Rey, VE = Vera. 2Between brackets methods of spatial father determination: RT = radio-tracking; CT = camera-trapping. 3NA = not assigned. 4The potential father was categorically excluded as a father of the kitten by both microsatellite and SNP genotype data.