Table 1.
LTR element coverage in unannotated lincRNAs
| Adipose Tissue |
Monocytes |
|||||||
|---|---|---|---|---|---|---|---|---|
| LTR family | Total Bases That Overlap LTR, n | Total Length of lincRNAs, bp | % lincRNA Bases Occupied by LTR | P Value | Total Bases That Overlap LTR, n | Total Length of lincRNAs, bp | % lincRNA Bases Occupied by LTR | P Value |
| ERV1 | 66,921 | 1,059,097 | 6.32 | 1 × 10−7 | 25,967 | 473,006 | 5.49 | 4.82 × 10−3 |
| ERVL | 38,023 | 3.59 | 5.26 × 10−5 | 11,905 | 2.52 | 0.21 | ||
| ERVK | 11,951 | 1.13 | 1.83 × 10−4 | 4,070 | 0.86 | 0.057 | ||
| ERVL-MaLR | 68,920 | 6.51 | 4.85 × 10−8 | 27,288 | 5.77 | 8.38 × 10−3 | ||
Coverage of ERV1, ERVL, ERVK, and ERVL-MaLR from the long terminal repeat (LTR) class is shown for unannotated lincRNAs in adipose tissue and monocytes. Total length of long intergenic noncoding RNAs (lincRNAs) is the projection of all lincRNA exons. P value for comparison of LTR coverage in unannotated lincRNAs compared with the whole genome is calculated with a sampling approach described in materials and methods.