Table 2.
SNPs zygosity and corresponding transition to transversion ratio (Ts/Tv) in pairwise transcriptome comparisons
| Number (%) | C/T (%) | A/G (%) | C/G (%) | A/T (%) | C/A (%) | T/G (%) | Ts/Tv | |
|---|---|---|---|---|---|---|---|---|
| Transition | Transition | Transversion | Transversion | Transversion | Transversion | |||
| All SNPs | 22,412(100) | 6643(29.6) | 6474(28.9) | 1992(8.9) | 2661(11.9) | 2383(10.6) | 2259(10.1) | 1.41 |
| Homozygous | ||||||||
| NAU-LB and NAU-RG | 3838 (17.1) | 1085 (4.8) | 1188 (5.3) | 403 (1.8) | 423 (1.9) | 418 (1.9) | 319 (1.4) | 1.35 |
| NAU-LB and NAU-YH | 3209 (14.3) | 940 (4.2) | 887 (4.0) | 316 (1.4) | 392(1.7) | 346 (1.5) | 328 (1.5) | 1.32 |
| NAU-RG and NAU-YH | 1342 (6.0) | 378 (1.7) | 377 (1.7) | 136 (0.6) | 167 (0.7) | 155 (0.7) | 129 (6.0) | 1.29 |
| Biallelic | ||||||||
| NAU-LB and NAU-RG | 9930 (44.3) | 2940 (13.1) | 2809(12.5) | 1226(5.5) | 908 (4.1) | 1032 (4.6) | 1015 (4.5) | 1.38 |
| NAU-LB and NAU-YH | 9559 (42.7) | 2808 (12.5) | 2748 (12.3) | 849 (3.8) | 1179 (5.3) | 1004 (4.5) | 971 (4.3) | 1.33 |
| NAU-RG and NAU-YH | 13,241 (59.1) | 3913 (17.5) | 3802 (17.1) | 1616 (7.2) | 1163 (5.2) | 1335 (6.0) | 1412 (6.3) | 1.4 |