Chemicals, Peptides, and Recombinant Proteins |
DMEM/F-12 medium |
Gibco |
11330-032 |
Sf-900 II SFM medium |
Gibco |
10902-088 |
Freestyle 293 medium |
Gibco |
12338-018 |
Lipofectamine 3000 reagent |
Invitrogen |
L3000015 |
Cellfectin II reagent |
Invitrogen |
10362100 |
lauryl maltose neopentyl glycol |
Anatrace |
NG310 |
Cholesteryl hemisuccinate |
Anatrace |
CH210 |
Digitonin |
Calbiochem |
300410 |
3′,5′-cyclic AMP sodium salt |
Sigma-Aldrich |
A6885 |
Critical Commercial Assays |
CNBR-activated Sepharose beads |
GE Healthcare |
17-0430-01 |
Superose 6, 10/300 GL |
GE Healthcare |
17-5172-01 |
Deposited Data |
Human HCN1EM density map |
This study |
EMDB: EMD-8511 |
Human HCN1EM with cAMP density map |
This study |
EMDB: EMD-8512 |
Human HCN1EM atomic model |
This study |
PDB: 5U6O |
Human HCN1EM with cAMP atomic model |
This study |
PDB: 5U6P |
Experimental Models: Cell Lines |
CHO-K1 |
ATCC |
CRL-9618 |
Sf9 |
ATCC |
CRL-1711 |
HEK293S GnTI-
|
ATCC |
CRL-3022 |
Recombinant DNA |
Human HCN1EM
|
This study |
N/A |
Software and Algorithms |
Seriel EM |
Mastronarde, 2005 |
http://bio3d.colorado.edu/SerialEM |
Unblur |
Grant and Grigorieff, 2015b |
http://grigoriefflab.janelia.org/unblur |
Gctf |
Zhang, 2016 |
http://www.mrc-lmb.cam.ac.uk/kzhang/ |
RELION |
Scheres, 2012 |
http://www2.mrc-lmb.cam.ac.uk/relion |
Gautomatch |
Kai Zhang |
http://www.mrc-lmb.cam.ac.uk/kzhang/ |
EMAN2 |
Tang et al., 2007 |
http://blake.bcm.edu/emanwiki/EMAN2 |
Blocres |
Cardone et al., 2013 |
https://lsbr.niams.nih.gov/bsoft/programs/blocres.html |
ResMap |
Kucukelbir et al., 2014 |
http://resmap.sourceforge.net/ |
SWISS-MODEL |
Biasini et al., 2014 |
https://swissmodel.expasy.org/ |
UCSF Chimera |
Pettersen et al., 2004 |
https://www.cgl.ucsf.edu/chimera |
PHENIX |
Afonine et al., 2013 |
https://www.phenix-online.org |
COOT |
Emsley et al., 2010 |
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot |
REFMAC |
Brown et al., 2015; Murshudov et al., 2011
|
https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/em_fitting/em_fitting.html |
ProSMART |
Nicholls et al., 2014 |
https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/prosmart/prosmart.html |
MolProbity |
Chen et al., 2010 |
http://molprobity.biochem.duke.edu |
EMRinger |
Barad et al., 2015 |
http://fraserlab.com/2015/02/18/EMringer/ |
HOLE |
Smart et al., 1996 |
http://www.smartsci.uk/hole |
PyMOL |
Schrodinger LLC, 2015 |
http://www.pymol.org |
Other |
R1.2/1.3 400 mesh Au holey carbon grids |
Quantifoil |
1210627 |