Table 5.

Coordinates of 24 novel transcripts determined by RACE-mapping in Staphylococcus aureus Newman and their assigned Srn identifiers.

Identifiers	Other names	Genomic coordinates	Strand	Length	ORF	Potential CDS	Homologies with known proteins or peptides
srn_0795	IGR_363783	363827–364198a	+	371	YES	YES	Partial with lipase
srn_9640	IGR_363785	363785–364009	−	265	NO	NO	None
srn_2058	IGR_897930	897979–898218	+	239	YES	NO	None
srn_2335	IGR_1050586; tsr18 b	1050865–1051075	−	210	YES	YES	Partial with SufA
srn_2347	IGR_1079951	1079989–1080300	−	311	YES	YES	None
srn_2348	as1	1080214–1080281	+	67	NO	NO	None
srn_9650	IGR_1103623	1103685–1104067	−	382	YES	YES	None
srn_9342	IGR_1141544; P1 c	1141253–1141502	+	249	NO	NO	None
srn_9343	as2 c	1141515–1141653	−	138	YES	YES	None
srn_9344	IGR_1141544; P2 c	1141525–1141656	+	131	NO	NO	None
srn_9345	IGR_1141544; S808 d, P3 c	1141676–1141990	+	314	NO	NO	None
srn_9346	as3 c	1141677–1141847	−	170	NO	NO	None
srn_2467	IGR_1175020	1175201–1175405a	−	204	NO	NO	None
srn_2468	IGR_1175024	1175217–1175422	+	205	NO	NO	None
srn_9348	IGR_1350072	1350145–1350345	+	200	YES	YES	None
srn_9349	IGR_1979939	1980012–1980322	+	310	YES	NO	None
srn_9660	IGR_2017461	2017588–2017972	+	384	YES	YES	None
srn_9670	IGR_2018908	2018982–2019366	+	384	YES	NO	None
srn_9671	as4	2019068–2019159	−	91	NO	NO	None
srn_9680	IGR_2019372	2019373–2019729	+	356	YES	YES	None
srn_9681	as5	2019391–2019458	−	67	NO	NO	None
srn_3765	IGR_2083121	2083196–2083472	−	276	YES	YES	None
srn_4635	IGR_2605426; S1077 d	2605636–2605853	−	217	YES	YES	None
srn_5075	IGR_2839262	2839213–2839434	−	221	NO	NO	None

^anot mapped by RACE; ^bdescribed by Carroll et al.²¹; ^cdescribed in Fig. 3, Table 3, and Table 4; ^ddescribed by Mader et al.¹⁵. ORF of 30 codons or more were identified using ORFinder. Potential CDS were searched using BLAST within the non-redundant database. Homologies with known proteins were searched using Uniprot database. Homologies were described as partial when the coverage and length of the amino acid sequence did not exceed 60% of the homologous protein sequence.