Table 1. Singular enrichment analysis (SEA) using AGriGO for genes more than two-fold differently expressed in psy2l versus WT.
Description/GO term | Up or down-regulated | Rosette number of genes | Seedling number of genes | BG/ref | p-value Rosette | p-value Seedling | Shared genes |
---|---|---|---|---|---|---|---|
MOLECULAR FUNCTION | |||||||
Kinase activity GO:0016301 |
Up | 37 | 57 | 417 | 8.00E-06 | 2.50E-15 | 12 |
Down | 93 | 83 | 417 | 5.20E-36 | 2.70E-20 | 21 | |
Protein tyrosine kinase activity GO:0004713 |
Up | 9 | 12 | 33 | 1.90E-05 | 4.60E-08 | 3 |
Down | 14 | 19 | 33 | 1.80E-09 | 8.40E-12 | 3 | |
Protein Ser/Thr phosphatase activity GO:0004722 |
Up | 15 | 12 | 58 | 6.20E-08 | 7.40E-06 | 4 |
Down | ns | 10 | 58 | ns | 3.10E-03 | ||
BIOLOGICAL PROCESS | |||||||
Anatomical structure and development GO: 0048856 |
Up | 74 | 70 | 330 | 2.60E-30 | 4.10E-28 | 22 |
Down | 35 | 67 | 330 | 1.10E-06 | 5.20E-17 | 9 | |
Response to hormone stimulus GO:0009725 |
Up | 63 | 64 | 755 | 4.90E-08 | 8.80E-09 | 18 |
Down | 68 | 85 | 755 | 5.90E-09 | 1.30E-08 | 18 | |
Response to abscisic acid stimulus GO:0009737 |
Up | 37 | 40 | 276 | 6.30E-10 | 7.40E-12 | 15 |
Down | ns | ns | 276 | ns | ns | ||
Response to ethylene GO:0009723 |
Up | 9 | 12 | 30 | 1.00E-05 | 2.00E-08 | 1 |
Down | 17 | 7 | 30 | 9.00E-13 | 3.10E-03 | 3 | |
Response to gibberellin stimulus GO:0009739 |
Up | 11 | 7 | 19 | 5.00E-09 | 2.90E-05 | 3 |
Down | 16 | 10 | 19 | 5.20E-14 | 1.40E-06 | 6 | |
Response to cytokinin stimulus GO:0009735 |
Up | ns | ns | 72 | ns | ns | |
Down | 11 | 15 | 72 | 3.70E-04 | 5.30E-05 | 5 | |
Flavonoid biosynthetic process GO:0009813 |
Up | 16 | 9 | 61 | 1.90E-08 | 9.30E-04 | 7 |
Down | ns | ns | 61 | ns | ns | ||
Transport GO:0006810 |
Up | 89 | 69 | 540 | 1.40E-27 | 6.40E-17 | 24 |
Down | 93 | 107 | 540 | 1.80E-28 | 1.10E-25 | 23 | |
CELLULAR COMPONENT | |||||||
Nucleus GO:0005634 |
Up | 107 | 99 | 212 | 7.2E-72 | 4.8E-65 | 31 |
Down | 74 | 98 | 212 | 1.4E-39 | 1.2E-48 | 18 |