Table 1. Sequencing and mapping statistics of M. rufoniger genome.

	Myotis bat references
	M. brandtii	M. davidii	M. lucifugus
Sequenced reads	1,240,507,648
Low quality filtered reads	1,152,154,630
Contamination filtered reads	1,149,260,980
Mapped reads	1,109,045,915	1,101,733,443	1,095,435,354
Mapping rate	96.50%	95.86%	95.32%
Deduplicated reads	1,023,540,144	1,017,982,320	1,010,388,456
Depth coverage	49.5 ×	51.5 ×	49.1 ×
1× genome coverage	90.17%	87.65%	92.29%
5× genome coverage	87.83%	85.68%	89.88%
8× genome coverage	86.47%	84.60%	88.52%
10× genome coverage	85.58%	83.88%	87.63%
1× CDS coverage	98.86%	99.10%	98.13%
5× CDS coverage	97.68%	98.19%	96.29%
8× CDS coverage	96.60%	97.33%	94.88%
10× CDS coverage	95.71%	96.60%	93.81%
The number of homozygous SNVs	50,615,560	56,635,858	50,441,069
The number of heterozygous SNVs	8,044,633	8,008,552	8,306,592
The number of homozygous indels	4,197,521	4,231,431	4,313,780
The number of heterozygous indels	517,253	457,868	512,018
The number of consensus genes	17,274	16,419	17,141
The number of consensus genes without gap	12,841	12,618	12,941