Table 2.
Chromosome-wide significant SNPs for PSL (new)
| SNP | Location (SSC:bp) |
MAF (case/control) |
Nearest gene | Strand | Distance to the nearest genes (bp) | Raw p value |
|---|---|---|---|---|---|---|
| ASGA0001519 | 1:21,382,287 | 0.461/0.455 | RAB32 | − | 40,041 | 9.32E-06 |
| ALGA0014296 | 2:89,825,751 | 0.240/0.455 | JMY/ HOMER1 | +/− | 15,695/18609 | 3.61E-06 |
| ALGA0014308 | 2:89,995,349 | 0.240/0.455 | HOMER1 | − | 0 | 3.61E-06 |
| H3GA0022494 | 7:98,558,186 | 0.253/0.107 | ENSSSCP00000021921 | + | 235,866 | 7.31E-06 |
| ALGA0087037 | 15:131,897,923 | 0.356/0.482 | TNP1 | − | 97,522 | 3.64E-06 |
| MARC0003725 | 15:131,919,478 | 0.445/0.420 | TNP1 | − | 119,107 | 8.44E-06 |
| MARC0006026 | 16:33,866,754 | 0.323/0.205 | ITGA1 | + | 74,317 | 8.71E-06 |