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. 2017 Jun 21;18(Suppl 1):20. doi: 10.1186/s12865-017-0204-1

Table 2.

Effect of different cutoff values for p-value on RATE results. A cutoff of p <0.01 gave the best results with MCC = 0.451

Cutoffs TP FP FN TN Total Accuracy Sensitivity Specificity Precision False Positive Rate Matthews Correlation Coefficient
p <0.05 27 17 13 45 102 0.706 0.675 0.726 0.614 0.274 0.395
p <0.01 22 8 18 54 102 0.745 0.550 0.871 0.733 0.129 0.451
p <0.005 18 5 22 57 102 0.735 0.450 0.919 0.783 0.081 0.432