Table 2. Length distribution of assembled transcripts and unigenes.
Transcript | Unigene | |
---|---|---|
Total number of transcripts or unigenes | 38,950 | 23,417 |
Number of transcripts or unigenes (200–500 bp) | 10,082 | 8,810 |
Number of transcripts or unigenes (500–1000 bp) | 5,945 | 3,971 |
Number of transcripts or unigenes (1000–2000 bp) | 9,003 | 5,045 |
Number of transcripts or unigenes (> 2000 kbp) | 13,920 | 5,591 |
Total length (bp) | 75,459,645 | 33,233,628 |
Min length (bp) | 201 | 201 |
Max length (bp) | 24,163 | 24,163 |
Mean length (bp) | 1,937 | 1,419 |
N50 (bp)a | 3,235 | 2,542 |
N90 (bp)a | 1,010 | 605 |
The N50 size is computed by sorting all transcripts from largest to smallest and by determining the minimum set of transcripts whose sizes total 50% of the entire transcript and unigene was the same; N90 was counted in a similar way.