Table 4. Deleterious and tolerated SNPs grouped according to Europe (EU)/Asia (AS) continent and domestic (DM)/wild (WB) status.
Continent | Population | SNP Typea | Nonsignificant Genes of Nonsignificant Pathways | Significant Genes of Nonsignificant Pathways | Nonsignificant Genes of Significant Pathways | Significant Genes of Significant Pathways | P-Valueb |
---|---|---|---|---|---|---|---|
Asia | ASDM | Tolerated | 8534 | 1,195 | 2,625 | 1,176 | 0.756 |
Deleterious | 6,825 | 954 | 2,144 | 927 | |||
λASDM | 0.800 | 0.798 | 0.817 | 0.788 | |||
ASWB | Tolerated | 6,245 | 843 | 2,029 | 636 | 0.033 | |
Deleterious | 4,432 | 587 | 1,320 | 391 | |||
λASWB | 0.710 | 0.696 | 0.651 | 0.615 | |||
ASDM/ASWB | λASDM/λASWB | 1.127 | 1.147 | 1.255 | 1.282 | ||
Europe | EUDM | Tolerated | 5,191 | 716 | 1,675 | 620 | 0.023 |
Deleterious | 3,429 | 483 | 1,200 | 349 | |||
λEUDM | 0.661 | 0.675 | 0.716 | 0.563 | |||
EUWB | Tolerated | 2,654 | 416 | 893 | 346 | 0.001 | |
Deleterious | 1,153 | 198 | 382 | 103 | |||
λEUWB | 0.434 | 0.476 | 0.428 | 0.298 | |||
EUDM/EUWB | λEUDM/λEUWB | 1.523 | 1.418 | 1.675 | 1.891 | ||
Total | Total | Tolerated | 22,624 | 3,170 | 7,222 | 2,778 | 0.003 |
Deleterious | 15,839 | 2,222 | 5,046 | 1,770 | |||
λTotal | 0.700 | 0.701 | 0.699 | 0.637 |
SNP, single nucleotide polymorphism; ASDM, Asian domestic; ASWB, Asian wild boar; EUDM, European domestic; EUWB, European wild boar.
λ corresponds to the ratio of deleterious vs. tolerated SNPs.
P-value obtained from χ2 test of the 2 × 2 table containing nonoverlapping SNP sets (nonsignificant genes from nonsignificant pathways vs. significant genes from significant pathways).