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. 2017 May 10;7(7):2171–2184. doi: 10.1534/g3.117.042671

Table 4. Deleterious and tolerated SNPs grouped according to Europe (EU)/Asia (AS) continent and domestic (DM)/wild (WB) status.

Continent Population SNP Typea Nonsignificant Genes of Nonsignificant Pathways Significant Genes of Nonsignificant Pathways Nonsignificant Genes of Significant Pathways Significant Genes of Significant Pathways P-Valueb
Asia ASDM Tolerated 8534 1,195 2,625 1,176 0.756
Deleterious 6,825 954 2,144 927
λASDM 0.800 0.798 0.817 0.788
ASWB Tolerated 6,245 843 2,029 636 0.033
Deleterious 4,432 587 1,320 391
λASWB 0.710 0.696 0.651 0.615
ASDM/ASWB λASDMASWB 1.127 1.147 1.255 1.282
Europe EUDM Tolerated 5,191 716 1,675 620 0.023
Deleterious 3,429 483 1,200 349
λEUDM 0.661 0.675 0.716 0.563
EUWB Tolerated 2,654 416 893 346 0.001
Deleterious 1,153 198 382 103
λEUWB 0.434 0.476 0.428 0.298
EUDM/EUWB λEUDMEUWB 1.523 1.418 1.675 1.891
Total Total Tolerated 22,624 3,170 7,222 2,778 0.003
Deleterious 15,839 2,222 5,046 1,770
λTotal 0.700 0.701 0.699 0.637

SNP, single nucleotide polymorphism; ASDM, Asian domestic; ASWB, Asian wild boar; EUDM, European domestic; EUWB, European wild boar.

a

λ corresponds to the ratio of deleterious vs. tolerated SNPs.

b

P-value obtained from χ2 test of the 2 × 2 table containing nonoverlapping SNP sets (nonsignificant genes from nonsignificant pathways vs. significant genes from significant pathways).