Table 3. Descriptive population genetic estimates for the sampled O. edulis populations included in the validation of the array.
MAF > 0 | |||||
---|---|---|---|---|---|
Sample N | # SNPs | Average MAF | Ho | He | |
Croatia | 9 | 8,474 | 0.234 | 0.323 | 0.320 |
Foyle_IRL | 10 | 10,013 | 0.224 | 0.319 | 0.311 |
Grevelingen_NLD | 10 | 9,946 | 0.224 | 0.319 | 0.310 |
Larne_NIRL | 10 | 8,927 | 0.231 | 0.354 | 0.316 |
Mersea_UK | 10 | 9,980 | 0.224 | 0.318 | 0.310 |
Quiberon_FR | 10 | 9,973 | 0.226 | 0.315 | 0.312 |
Rossmore_IRL | 10 | 9,846 | 0.228 | 0.327 | 0.314 |
Sveio_NOR | 10 | 9,118 | 0.226 | 0.322 | 0.313 |
Swansea_UK | 9 | 9,696 | 0.224 | 0.319 | 0.311 |
Tralee_IRL | 10 | 9,980 | 0.219 | 0.317 | 0.306 |
Maine_USA | 10 | 9,614 | 0.221 | 0.317 | 0.305 |
Average within populationa | 9,597 | 0.225 | 0.323 | 0.312 | |
All populations (combined)b | 108 | 11,151 | 0.210 | 0.292 | 0.311 |
MAF, minor allele frequency; #, number; SNPs, single nucleotide polymorphisms; Ho, level of genetic variability in terms of observed heterozygosity; He, level of genetic variability in terms of expected heterozygosity.
Values represent the within-population average.
Values were obtained by the analysis of the combined dataset, not the average of the individual populations.