Table 1. Point estimates from fits to Drosophila data. Reported log-likelihoods ($LL$) are for two-locus data using the demographic history parameters from each fit. 95% confidence intervals are given in Table S1 in File S1.

Data Statistics (Model)	${\nu }_1$	${\nu }_2$	$T_1$	$T_2$	$p_{\text{mis}}$	$N_e$	$LL$
One-locus (2-epoch)	4.23		0.329		0.0476	302,900	–1,368,000
One-locus (3-epoch)	2.35	10.7	0.388	0.0938	0.0496	291,500	–1,629,500
Two-locus (fix $N_e,$ 2-epoch)	4.05		0.371		0.0454	3 × 105	–1.325,400
Two-locus (fix $N_e,$ 3-epoch)	1.76	4.67	0.302	0.247	0.0469	3 × 105	–1,289,400
Two-locus (var. $N_e,$ 2-epoch)	4.05		0.371		0.0454	299,900	–1,325,400
Two-locus (var. $N_e,$ 3-epoch)	1.47	4.64	0.398	0.287	0.0474	286,600	–1,283,740