Table 2.
Degree of overlap between the sets of bovine enhancers analysed
| VISTAa (%) | FANTOM5b (%) | dbSUPERc (%) | H3K27acd (%) | H3K4me3e (%) | |
|---|---|---|---|---|---|
| VISTA | 100 | 19.63 | 71.29 | 1.89 | 0.26 |
| FANTOM5 | 24.92 | 100 | 52.18 | 9.86 | 3.74 |
| dbSUPER | 16.88 | 9.73 | 100 | 4.30 | 1.43 |
| H3K27ac | 0.17 | 0.70 | 1.63 | 100 | 26.97 |
| H3K4me3 | 0.07 | 0.80 | 1.65 | 81.66 | 100 |
Each value in the table represents the ratio, expressed as a percentage, of the total overlapping base pairs between the two enhancer sets listed in a row and column, relative to the total number of base pairs in the enhancer set listed in the corresponding row
aVISTA is a database for evolutionarily ultra-conserved sequences between vertebrates
bFANTOM5 is a database for active enhancers from various human and mouse tissue
cdDbSUPER is a database for super-enhancers from various human or mouse tissues across multiple studies
dH3K27ac represents the dataset from the Villar et al. [29] study, which used ChIP-Seq profiling to detect the regions of the bovine genome that contained the histone modification signal H3K27ac from four bulls’ liver tissues
eH3K4me3 represents the dataset from the Villar et al. [29] study which used ChIP-Seq profiling to detect the regions of the bovine genome that contained the histone modification signal H3K4me3 from four bull’s liver tissues