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Scheme showing some of the key Alternaria-responsive miRNAs and their targets in tomato. (A) Regulated miRNAs with their corresponding targets which are inversely correlated in our NGS analysis. The arrows indicate positive regulation and the hammer head represents negative regulation. (B) miRNA cleavage sites in some mRNAs as determined by modified 5′-RLM RACE. Arrows indicate the position of the cleavage.
