Table 1.
Statistics of De Novo Assembly for the R. philippinarum Genome
| Ruditapes philippinarum Assembly | No. of Sequences | Total Bases | Longest (kb) | N50 (kb) | N90 (kb) |
|---|---|---|---|---|---|
| Short-read assembly | |||||
| Contig (PE) | 4,861,413 | 2,257,620,557 | 96,344 | 3,333 | 128 |
| Scaffold (PE + MP) | 298,671 | 2,478,800,284 | 474,845 | 32,797 | 5,215 |
| Long-read assembly | |||||
| Contig (TSLR) | 247,445 | 2,206,994,927 | 149,501 | 12,971 | 4,470 |
| Total-read assembly | |||||
| Scaffold (PE + MP + TSLR) | 223,851 | 2,561,070,351 | 572,939 | 48,447 | 7,827 |
| HaploMerger | 13,411 | 1,078,771,101 | 1,050,406 | 119,518 | 39,029 |