Table 2.
ERSE sequences in the selected bipartite octamers
| LDSS cluster | Sequence | Motif | RAR (Tunicamycin_up) |
|---|---|---|---|
| 1_REG | ACCA…………CACG | ERSE: CCAAT-N9-CCACG | 4.42 |
| 1_REG | TCCA…………CACG | ERSE: CCAAT-N9-CCACG | 6.4 |
| 1_REG | CCAA………GCCA | ERSE: CCAAT-N9-CCACG | 3.52 |
| 1_REG | CCAA……….CCAC | ERSE: CCAAT-N9-CCACG | 4.65 |
| 1_REG | CCAA……….CACG | ERSE: CCAAT-N9-CCACG | 6.42 |
| 1_REG | CCAA…………ACGT | ERSE: CCAAT-N9-CCACG | 5.64 |
| 2_REG | CAAT………CCAC | ERSE: CCAAT-N9-CCACG | 5.84 |
| 1_REG | CAAT……….CACG | ERSE: CCAAT-N9-CCACG | 7.76 |
| 1_REG | CAAT……….ACGT | ERSE: CCAAT-N9-CCACG | 6.83 |
| 1_REG | CAAT…………CGTG | ERSE: CCAAT-N9-CCACG | 4.95 |
| 2_REG | AATA………CACG | ERSE: CCAAT-N9-CCACG | 2.3 |
| 2_REG | AATC………CACG | ERSE: CCAAT-N9-CCACG | 6.8 |
| 4_REG-like | CACG…………ATTG | ERSE: CCAAT-N9-CCACG | 8.53 |
| 2_REG | GACG…………ATTG | ERSE: CCAAT-N9-CCACG | 4.39 |
| 1_REG | ACGT……….GATT | ERSE: CCAAT-N9-CCACG | 3.93 |
| 2_REG | ACGT……….CATT | ERSE: CCAAT-N9-CCACG | 4.07 |
| 1_REG | ACGT……….ATTG | ERSE: CCAAT-N9-CCACG | 8.69 |
| 1_REG | ACGT…………TTGG | ERSE: CCAAT-N9-CCACG | 10.25 |
| 2_REG | CGTG………TATT | ERSE: CCAAT-N9-CCACG | 4.37 |
| 1_REG | CGTG………GATT | ERSE: CCAAT-N9-CCACG | 4.28 |
| 2_REG | CGTG………CATT | ERSE: CCAAT-N9-CCACG | 6.64 |
| 1_REG | CGTG……….ATTG | ERSE: CCAAT-N9-CCACG | 11.96 |
| 1_REG | CGTG……….TTGG | ERSE: CCAAT-N9-CCACG | 12.8 |
| 1_REG | CGTG…………TGGT | ERSE: CCAAT-N9-CCACG | 10.88 |
| 2_REG | GTGG………ATTG | ERSE: CCAAT-N9-CCACG | 5.69 |
| 3_REG-like | GTGT………ATTG | ERSE: CCAAT-N9-CCACG | 4.87 |
| 2_REG | TGGC………TTGG | ERSE: CCAAT-N9-CCACG | 5.74 |
| 4_REG-like | TGTC………TTGG | ERSE: CCAAT-N9-CCACG | 5.09 |
LDSS cluster indicates the group number of LDSS clustering shown in Fig. 2C. Sequence matching with ERSE is indicated with underlining. A dot in a sequence means any nucleotide. The RAR values of each octamer for tunicamycin up-regulation are also shown. RAR values >3.0 are shown in bold.