Table 2.
Binding free energies and equilibrium dissociation constant of Dbh and the mutants to primer/template DNA.
| Mutation sites | Primer/Template DNA(a) | Free binding energy Δ Gbind (kcal/mol) | (ΔGbind)mutant − (ΔGbind)wt (kcal/mol) | Variants | Equilibrium dissociation constant Kd(nM) |
|---|---|---|---|---|---|
| WTDbh | P | −2251.8 | 0 | WTDbh | 54.8 ± 3.8 |
| T | −3465.7 | Sdbh | 51.2 ± 2.4 | ||
| KSKIP(241–245) RVRKS | P | −2579.5 | −532.2 | SdbhKSKIP(241–245) RVRKS | 34.8 ± 1.2 |
| T | −3670.2 | ||||
| M76I | P | −2414.7 | −380 | SdbhM76I | 42.8 ± 3.1 |
| T | −3682.8 | ||||
| L250V | P | −2422.1 | −318.3 | SdbhL250V | 50.4 ± 3.4 |
| T | −3603.7 | ||||
| T37F | P | −2313.6 | −159 | SdbhT37F | 49.7 ± 3.1 |
| T | −3562.9 | ||||
| A221S | P | −2344.03 | −100.45 | SdbhA221S | 47.5 ± 3.0 |
| T | −3473.91 | ||||
| I62V | P | −2145.6 | −60.3 | SdbhI62V | 49.8 ± 2.6 |
| T | −3632.2 | ||||
| K337R | P | −2554.6 | 42.4 | SdbhK337R | 55.5 ± 4.1 |
| T | −3120.5 | ||||
| Y249I | P | −2305.0 | 293.6 | SdbhY249I | 56.2 ± 3.4 |
| T | −3118.9 |
(a)dsDNA (Primer/Template DNA) referred to the chain primer extended (P(5-3′)) and the corresponding template chain (T(3′-5′)).