Table 2. Pairwise comparison of the isolated CH/ZBD, 1B and helicase core domains of MERS-CoV nsp13, EAV nsp10 and Upf1 helicases.
Domain | Comparison | Dali Z-score | rmsd(Å) |
---|---|---|---|
CH/ZBD | nsp13 vs nsp10 | 4.4 | 3.4 |
nsp13 vs Upf1 | 10.2 | 2.2 | |
nsp10 vs Upf1 | 3.0 | 3.5 | |
1B | nsp13 vs nsp10 | 3.4 | 2.5 |
nsp13 vs Upf1 | 2.8 | 3.3 | |
nsp10 vs Upf1 | 2.8 | 2.8 | |
Helicase Core |
nsp13 vs nsp10 | 23.2 | 2.7 |
nsp13 vs Upf1 | 26.3 | 4.5 | |
nsp10 vs Upf1 | 20.9 | 3.6 |
nsp13: MERS-CoV nsp13, PDB ID: 5WWP
nsp10: EAV nsp10, PDB ID: 4N0N
Upf1: scUpf1 helicase, PDB ID: 2XZL