Table 1.
Substrate | % peak area | % VP1 | <RNA/capsid> | ||
---|---|---|---|---|---|
capsid | pentamer | capsid | pentamer | ||
300 nt RNA | 85.5% | 14.5% | 77% | 23% | 1.30 |
500 nt RNA | 96.1% | 3.9% | 94% | 6.2% | 1.07 |
600 nt RNA | 96.1% | 3.9% | 94% | 6.2% | 1.07 |
800 nt RNA | 96.5% | 3.5% | 94% | 5.6% | 1.06 |
600 mer PSS | 1 | 0 | 100% | 0 | 1 |
Peak areas were calculated from the chromatographs in figure 1. The total absorbance of the capsid peak includes RNA absorbance with an estimated extinction coefficient of 4000 M−1 cm−1 per nucleotide 53. PSS has negligible absorbance at 280 nm. Assuming all substrate was in the capsid peak, we calculated the fraction of VP1 in the free pentamer and capsid peaks.