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. 2016 Jul 8;311(2):L433–L452. doi: 10.1152/ajplung.00128.2016

Table 3.

Autophagy and mitophagy in pulmonary fibrosis

Experimental Models Evidence of Altered Autophagy Protective Effect of Autophagy on Fibrosis Reference
ER stress LC3 and ubiquitinated protein immunoreactive staining and P62 protein levels are increased in IPF lung tissues. Autophagy induction by mTOR inhibitor Torin1 suppresses ER stress-induced cell senescence in HBEC. Lc3 and Atg5 silencing exacerbate ER stress-induced senescence. Araya et al. 2013
ER stress (tunicamycin) increases LC3-II
Tunicamycin intratracheal injection combined with infection with MHV68 (a murine gamaherpesvirus homologous to EBV) (an in vivo ER stress model) led to lung fibrosis. Silencing Pink1 in A549 cells enhanced tunicamycin and bafilomycin exposure-induced increase of mitochondrial mass. Bueno et al. 2015
PINK1 is downregulated in AECIIs of IPF patient lung, and in mice exposed to ER stress. Pink1 overexpression ameliorated the tunicamycin and bafilomycin-induced mitochondrial accumulation.
Pink1 knockout mice exhibited enlarged swollen mitochondria in lung tissues, lower mitochondrial number per cell, decreased complex I and IV activities, but increased LC3-II accumulation. Enhanced p62 levels and increased fibrosis were evident in response to MHV68.
TGFβ TGFβ decreased senescence and increased differentiation of fibroblasts from explanted human lungs. Lc3 and Atg5 silencing has no effect on HBEC senescence but increased α-SMA and type I collagen levels, and TGFβ further enhanced their expression. Araya et al. 2013
TGFβ increased LC3-II and decreased p62 in lung fibroblasts mTOR inhibitor Torin1 suppressed α-SMA and type I collagen levels, without changing senescence.
TGFβ induces fibronectin, collagen-1 and α-SMA in human lung fibroblast MRC-5 cells. mTOR is activated, LC3-II is decreased and p62 is increased. Silencing Becn1 and Lc3 enhanced, while rapamycin attenuated, TGFβ-induced fibronectin and α-SMA increase in MRC-5 cells. Patel et al. 2012
Human IPF lung mitochondria exhibit higher PINK1 compared to controls. In Beas-2b cells, TGFβ increased PINK1, mitochondrial fragmentation, and colocalization of PINK1 with LC3. In Beas-2b cells, silencing Pink1 enhanced cell death in response to TGFβ. Patel et al. 2015
In normal human lung fibroblasts, TGFβ suppresses autophagic flux as assessed by measurement of LC3-II levels with and without chloroquine. Furthermore, many autophagy genes are regulated by TGFβ. Induction of autophagy using Tat-beclin 1 reduced expression of fibrotic markers in fibroblasts, and inhibition of autophagy by knockdown of ATG5 and ATG7 had the opposite effect. Sosulski et al. 2015
Bleomycin Bleomycin (a single intratracheal instillation of 2.5 U/kg of bleomycin)-treated rats (28th day) exhibited higher fibrotic markers including α-SMA, fibronectin, collagens I and III, together with higher p-mTOR, lower BECN1 and lower LC3-II. Berberine increased BECN1, LC3-II and autophagosomes, decreased bleomycin-induced p-mTOR, and reversed bleomycin-induced ultrastructural alteration of the lung, likely through inhibition of PI3K/Akt, and mTOR. Chitra et al. 2015
Not assessed Inhibition of mTOR with rapamycin protected against bleomycin-induced fibrosis in mice. Patel et al. 2012
In mice, bleomycin (3.0 U/kg, intratrachea instillation) on 28th day increases LC3-II, BECN1, p-mTOR, and p62; decreased VPS34 and p-Bcl-2. Inhibition of autophagy with 3-MA reversed the antifibrotic effect of IL17A blockage. Mi et al. 2011
IL-17A neutralizing antibodies attenuate bleomycin-induced lung fibrosis, p-mTOR, and p62 in mice and further increase BECN1, VPS34, and p-Bcl-2.
Bleomycin-induced fibrosis is exaggerated by Mmp19 knockout in mice. Mmp19−/− fibroblasts exhibited diminished ATG4C proteins. Not assessed Jara et al. 2015
Not assessed Pink1 knockout mice exhibited increased fibrosis severity and elevated collagen deposition in response to bleomycin. Bueno et al. 2015
Patel et al. 2015
Aging There is an age effect in bleomycin induction of LC3 puncta, LC3-TOM20 colocalization, lipofuscin, and collagen deposition in mice. Not assessed Soulski et al. 2015
There is an age effect on mitochondrial dynamics, ER stress, susceptibility to MHV68-induced mitochondrial dysfunction, Pink1 expression, and fibrosis in AECIIs. Pink1-deficient mice showed increased susceptibility to lung fibrosis after MHV68 infection. Bueno et al. 2015
Familial Lung epithelia from patient with SFTPC I73T heterozygous mutation showed increased autophagic vacuoles. Not assessed Hawkins et al. 2015
Exogenous expression of I73T in HEK cells increased autophagosomes, increased PARKIN and mitochondrial MTCO2, and increased LC3-II response to bafilomycin, while attenuating degradation of aggregate-prone protein substrates.
HPS is an autosomal recessive disorder and some patients develop lung fibrosis, with surfactant accumulation, lysosomal stress, and AECII apoptosis. LC3B and p62 are increased in HPS1/2 mice and human patients' lungs. Lc3b overexpression decreased HPS1 knockdown-induced p62 accumulation in A549 cells. Ahuja et al. 2015
Transgenic mice carrying misfolded variant α1-antitrypsin Z exhibited increased LC3-II in the lung, collagen deposition, and leukocyte infiltration. CBZ and Flu, or overexpression of transcription factor TFEB, decreased lung collagen deposition and leukocyte infiltration in α1-antitrypsin Z mice. Hidvegi et al. 2015
Experimental Models Evidence of Altered Autophagy Detrimental Effect of Autophagy on Fibrosis Reference
TGFβ Nintedanib, an inhibitor of multiple tyrosine kinases, increased autophagic flux in primary human lung fibroblast from explants of patient lungs, downregulated fibronectin and collagen 1a1 production and inhibited TGFβ signaling. Becn1 silencing did not change nintedanib effects on fibronectin and collagen 1a1. Lc3 silencing further decreased fibronectin and collagen 1a1, implying that even though nintedanib enhances autophagic flux and attenuates fibrosis, the endogenous LC3 promotes fibrosis when nintedanib is present. Rangarajan et al. 2015
Bleomycin Mice with bleomycin-induced injury had increased Pink1, Parkin, and LC3-II expression in alveolar macrophages. Parkin knockout mice were protected against collagen deposition and destruction of lung architecture after administration of bleomycin. Larson-Casey et al. 2016